Detail information of 5_circ_ag.10


General Information
CircRNA Name 5_circ_ag.10
ID in PlantcircBase ath_circ_037850
Alias At_ciR134
Organism Arabidpsis thaliana
Position chr5: 4096067-4100665  JBrowse»
Reference genome TAIR10.38
Type   ag-circRNA
Identification method CIRI, find_circ
Parent gene NA
Parent gene annotation NA
Parent gene strand NA
Alternative splicing 5_circ_ag.2 5_circ_ag.3 5_circ_ag.4 AT5G12950_circ_g.1 5_circ_ag.2 AT5G12950_circ_g.3 AT5G12950_circ_g.4 5_circ_ag.5 5_circ_ag.6 5_circ_ag.7 5_circ_ag.8 5_circ_ag.9
Support reads 38/330
Tissues leaf/root, aerial, inflorescences, whole_plant
Exon boundary   Yes-Yes
Splicing signals   GT-AG
Number of exons covered NA
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TTCTTTGCAGGTAATTTCCTATCAATCAAACAGAAATGGAAATCTGGTGATCAAGTAACCATGG
AGCTACCAATGAGTATCAGAACCGAAGCTATAAAAGatgatcggccagagtacgcatctcttca
agccatactctatggcccctacttgttagccggacacacgagcagggactggagcatcacaact
caggctaa
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence ATGATCGGCCAGAGTACGCATCTCTTCAAGCCATACTCTATGGCCCCTACTTGTTAGCCGGACA
CACGAGCAGGGACTGGAGCATCACAACTCAGGCTAAACCTGGAAAATGGATAACCCCTATACCT
GAAACTCAAAACAGTTACCTTGTCACACTCTCACAACAATCTGGAAACGTATCTTACGTGTTTT
CAAATAGCAACCAAACCATCACAATGAGAGTATCACCCGAGCCAGGGACACAAGATGCCGTTGC
AGCGACTTTCAGGCTCGTGACTGATAATTCTAAACCACGGATTTCGGGTCCAGAAGGACTAATT
GGAAGGCTGGTCATGCTTGAGCCGTTTGATTTCCCTGGCATGATTGTAAAGCAAGCAACTGATA
GCTCCCTCACAGTTCAAGCTTCTTCTCCTAGTGACAAAGGAGCTTCTAGCTTTCGGTTAGTATC
TGGACTTGACGGGAAGCTAGGAAGCGTTTCGTTAAGACTAGAGAGCAAAAAAGGTTGTTTTGTG
TACAGCGATCAAACCCTAAAGCAAGGGACAAAACTAAGGCTAGAATGTGGTTCGGATGCGACTG
ATGAGAAGTTTAAAGAGGCAGCAAGCTTTAGTTTAAAGACAGGAATGCATCAATACAATCCAAT
GAGTTTCGTGATGAGCGGAACACAGAGGAACTTTGTGTTATCGCCATTGTTTAGCTTAAGAGAT
GAAACATACAATGTGTACTTCAGTGTGCAAACTTGAAGAAAGAAACCCTTATTGGGTGAAAATA
TAAGAAAGAAAAGTCTCATTTGAAATATAGACATGTGTTTAGATGTTTAGCCTCTTAGGTTTGT
TTGTGATTTTGTGTTCTGCAATGTCATCTAAAAATGTATGTTGCTGTTACAATAAATATAAACA
AATGTGTTTTTATAAATTGTGCTAACGATGAATCCATGTCTTTCTTTATATTCTAAATATAGAG
TGGAGAATAGTGTGTTGCCTTGAGCTTTCATGAAATAATATTCTCATATGTGATCTGTTGCAGA
AATTAGAATACCATAGTTATTGTATCAAAATATCCAACACATGAAAAGTAAAATATCCAACAAA
ATCACACGCATAAACATTACTTACGAATACGATAGTTATTGTGTTTATGCGTGTGATTTTCACT
TTGGTGGAGATAACTTCTATAGAAGAGGGGAGAATATTATACAGTATTTTGGAAATATGTTATA
ATTTTGGAGAAATCACAAATCAAAGTTTATAATTACATTCAGGGAGATTTTACAAGATTATAGA
AAAACTTTATAAGATTTTGGAAAAACTAATCATAGAAATTATACAAAATTCTCTAGTAATCATT
TAAAATCTTTGACATATCTACTTTCTATATTTTTTAAAAGTCATTAAAATTCTTTCAAAATCAC
AAACCAATAACACCCCCTTAATCTTTTTTTACAACAAATCCTCCTCTGTTTTTATCCAAATCCT
CTCTGTTTTTATCCAAATCCTCCTCTGTTTTTCTCTTTCACTTGATTGAATTCTTTTTTTAGCA
GACATTGCTTCAATCGTTAGAAAATCTATTTTTGGCACACATTTTCTTTAGAAATCTTTTGCTT
TATAAACATCTCTTCTCATTATTTTCTTCTTCCATTTCAAATCCCCTCTCCCTAACAGTTTTGA
GTCTCTTGGATTCTGAACGTGGGATCTGGGGATTTGAATAGTTACACTTTTTTGTTTATGAAAA
AACATACGATGAAGTCTGGTGTGATCATAACCATTGCTCTGTTATTATACACAAGCTTTCTTCT
TGTTTGTCTGGCGAAAGAGTGTACAGACATTCCTACGAAGCTCTCATCGCATACTCTCCGCAGC
GAGCTTCTGCAATCACAGAACGCAAATTTGAAGTCAGAGGAGTTCTCTCATTACCATTTAACTC
CAACTGATGACTCTGCTTGGTCTACTTTGTTGCCAAGGAAGATGTTGAAAGAAGAGACTGATGA
TTTTGCTTGGACTATGTTGTATAGAAAGTTCAAGGACTCTAATTCCTCTGGTAACTTTCTCAAG
GATGTCTCTTTGCACGACGTTAGGCTGGACCCGAGCTCTTTCCATTGGAGGGCTCAGCAGACAA
ACCTTGAGTATCTATTGATGTTGGATGTTGATGGTTTGGCCTATAACTTCCGTAAAGAAGCTGG
TCTTAATGCTCCTGGAGTTCCCTATGGAGGATGGGAGAAACCAGATAGTGAACTCCGTGGCCAT
TTTGTCGGTATAAACCTCTGCCTTTTTCCCCAATTCAATACACTTTCTTGATTCATGCTGTTGA
TAGTATGCAGGAAAAGGTTTTGAGATTTGATGTTTGGTATAGATTGCATAGGCCCTTATAGGAA
TCACCTTTTGACATTTCATAGACACTTGAAAGGATTTTAACTCTTACATTGCATAGAACCTTAA
AGGAATGACCTTTTAGTTGATGGCTCAAAAATCTGTCTGTTTGTTTTGAAGGTCACTATTTGAG
TGCAACAGCTTATATGTGGGCAAGTACTCATAACGAAACTCTCAAGGCGAAAATGACAGCTCTT
GTCTCAGCTCTAGCGGAATGCCAGCAGAAATATGGCACAGGATATCTCTCAGCTTTCCCTTCCA
GTTTTTTCGACCGGTTTGAAGCTATAACACATGTTTGGGCTCCTTACTATACCATTCACAAGGT
GAATAGTCAGACCCTTTGACTGAGTTGAAGATTGATATGCTTATGTTTTGCAAGAGAGTAACAT
CTCTGTCTTAATTTTGACAGATTTTGGCCGGCCTGGTGGATCAATACAAGTTGGCTGGGAATAC
TCAAGCTTTAAAGATGGCAACAGGGATGGCTGATTACTTTTATGGCCGTGTTCAAAATGTGATA
AAGAAGTACAGTGTTGAACGACATTGGCTATCACTAAACGAAGAGACTGGTGGCATGAATGATG
TTCTTTATCAGCTATACAGCATCACTGTGAGTTAAAATCTTATCAGACTCTAAACTCCAACCTT
AGATTTCTATCTAGCTTTGTGTTATATCATAGTGTTTTGGACTCTGCAGAGAGATTCCAAGTAT
TTGTTTCTCGCACATCTCTTTGACAAGCCTTGCTTTCTCGGAGTCCTCGCAATTCAGGTAATTT
ACTTGATGATTAGCTTGAAGCCTTGAAGAGATGTGAATGGTAAGGTCACATAACTTGACATGTT
TGTTTGCAGGCCGATGATATTAGTGGATTCCACGCTAATACACATATTCCCATCGTCGTTGGAT
CCCAACAACGGTATGAAATCACTGGTGATCTACTCCATAAGGTATCGAAGAGTAACCAAGAAAA
GTGTGACATTTTTATCAAAGAAGATATTGGTTCTCTTGATTCTGAAATCTGCATTTCCAGGAAA
TCCCGATGTTCTTTATGGACATAGTTAATGCTTCACACAGCTATGCAACTGGAGGAACATCAGT
CAAAGAGTTCTGGTACTACCATTACTTGACTTTAGAGTTTGGTTCTTTGTAACATGACTTTTTG
TTTTAAGTCTTAACCATGATTTGGGAATATTTAACATTAGGCAAGATCCAAAGAGAATGGCGAC
TACGTTGCAAACTGAAAACGAGGAATCATGTACTACTTATAACATGCTCAAGGTAGGATTTCAA
ACTTCCCCACACCCCCACCCCCCTCTTTTCATTTGCTCAACGTAACATATTGACACTTGTACAA
TTTCAGGTCTCTAGGAATCTGTTCAGATGGACAAAAGAGGTTAGCTATGCAGACTATTACGAGC
GCGCTTTGACCAACGGTGTGCTCGGAATTCAAAGAGGAACCGATCCCGGACGGATGATCTACAT
GCTCCCATTGGGTAAAGGTGTTTCTAAGGCTGTGACTTATCACGGTTGGGGAACACCTTATGAT
TCCTTTTGGTGTTGCTATGGCACTGGTAAACTTTTAACCACAATCATCTGGTTTTCTACATTTT
TCTTGTTTCAAGACAGATTAATTTTGAGGTAATGGTAGTAATTGAATCTTTCTGTCCACAGGAA
TTGAATCCTTCTCAAAACTGGGAGATTCCATATATTTTCAAGAAGATGGTGCAACTCCAGCTCT
TTATGTCACCCAATATATATCAAGCTCACTTGATTGGAAATCTGCTGGTCTTTCAATATCTCAG
AAAGTTAATCCTGTTGTGTCGTGGGATCCGTACATGCGTGTGACATTCACTCTTTCTTCTTCCA
AAGTGGTAAAACTTTTGCACAACTTGATGCAACATGTTACATTGAAGAAAGAGTCTGATGGATC
CAATTTTGTTGCAGGGAGTGGCGAAGGAGTCGACTTTGAATCTAAGAATTCCTGTTTGGACTAA
CTCTATAGGTGCCAAAGTATCTTTGAATGGGCGACCCTTAAACGTACCAACTTCAGGTGATTTG
AGCATTAGGTTCTAAAAAGCAGAACTCGCTTGACTGTTACAGTCTCTAGTTTGTGAAATGAGAA
TCATATTGTACCTGTCTTTTTCTTTGCAGGTAATTTCCTATCAATCAAACAGAAATGGAAATCT
GGTGATCAAGTAACCATGGAGCTACCAATGAGTATCAGAACCGAAGCTATAAAAG
Conservation Information
Conserved circRNAs NA
PMCS 0.939996382
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Ye et al., 2015;Chu et al., 2017