Detail information of Os04g0280200_circ_g.19


General Information
CircRNA Name Os04g0280200_circ_g.19
ID in PlantcircBase osa_circ_023300
Alias NA
Organism Oryza sativa
Position chr4: 11875134-11879117  JBrowse»
Reference genome IRGSP-1.0.38
Type   u-circRNA
Identification method PcircRNA_finder
Parent gene Os04g0280251
Parent gene annotation Hypothetical protein. (Os04t0280251-00)
Parent gene strand -
Alternative splicing Os04g0280200_circ_g.2 Os04g0280200_circ_g.3 Os04g0280200_circ_g.4 Os04g0280200_circ_g.5 Os04g0280200_circ_g.6 Os04g0280200_circ_g.7 Os04g0280200_circ_g.8 Os04g0280200_circ_g.9 Os04g0280200_circ_g.10 Os04g0280200_circ_g.11 Os04g0280200_circ_g.12 Os04g0280200_circ_g.13 Os04g0280200_circ_g.14 Os04g0280200_circ_g.15 Os04g0280200_circ_g.16 Os04g0280200_circ_g.17 Os04g0280200_circ_g.18 Os04g0280200_circ_g.20 Os04g0280200_circ_g.21 Os04g0280200_circ_g.22 Os04g0280200_circ_g.23 Os04g0280200_circ_g.24 Os04g0280200_circ_g.25 Os04g0280200_circ_g.26 Os04g0280200_circ_g.27 Os04g0280200_circ_g.28 Os04g0280200_circ_g.29
Support reads 5
Tissues seed
Exon boundary   No-Yes
Splicing signals   GG-CA
Number of exons covered Os04t0280200-01:5
Os04t0280251-00:4
Os04t0280200-01:5
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   AGATCAGAAAGAATCACAAAGCAGAAGTTCCTTGCTTTGACTTTGAGAAGTGCAAAAGAAAGAA
ATTCGAGGAGCTTCAAGTCTCTGAGGAATGTGGAGTggggtcccacgacttaatacgccaccac
caatctcaaggaaattactgactgaaagtcaagaaaaaaaaattgttgcaccaaagccaattcg
tgtttcga
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence GGGGTCCCACGACTTAATACGCCACCACCAATCTCAAGGAAATTACTGACTGAAAGTCAAGAAA
AAAAAATTGTTGCACCAAAGCCAATTCGTGTTTCGACCGAAAATGTTGCAAATTTTGATGACTT
TGCACAACCATGGACGAGGTCTCCACCCAAAAAGTTTGACCAGGAGCCTGTTATGGGAAAATGG
CAGTTCAATCAAGGTTTTAAACTTGTGCTTTCATTTATGATTTTTGCCTTGCATATTCTGTTCT
TTAATGCTAAAACAAAGGGCATTTTCTCTTGTCATTGGATATCATGTGCAGCCCATTAGGGCCC
ATAGAGTGGTCTGCCTCTCTAGGGCTGGTGGTACTGTGCATTAATAGTACCTACTTGGTTAATT
TTCGTGCGTGGATAGTTCATGTCAGGTGGTCTTATTAGAGATAAGGTTAGACTTATAAGTTAGT
TATTTTCTTAATACTAGGGATAGGTTTCTTAATGGTCAAGCTAACACATCTATATGACGGGGTT
TGTATTTTACTCATCAAGCAAGTAATAAACAAGAGTATTTAGTCTTCCCCTTCTCTCCTGCCCT
TGTGGCGTGGCTGCCTCAATGGCACCGCTGCCACTTGGGTCCAGGGATACACAACTAGAAATAG
GCGCAAGTGCCCTAATCCCAACCATGCCTATTACGGAGTACATTGGAAACCATATTTATTTATT
ATTTTTTCTGTAGAAAATCCATTGAATATATTCTTACACTTTTGCAGATTCTTCTTCAGGAAGT
AACATCCAGTTAGCTCCACTGCCAGACTCCTATGACTTAGATAGGGGTCTTCTCCTATCAGTTC
AAGCAATTCAGGTAAATGAAACCACATTCTATTTTTTTCATCACAGTTACGCATTACTGATCTG
TAACATATTCCATTAATTGTTGTCTTTCAGGCATTGTTGGAGAACAAAGGATTTCCTGTCATTG
TTGGGATTGGTAATAACATCTTTACCGTTAATAAAGTAGCAGTAGTTTTGTGTTTACTAAGACC
AAGCATCTGCTTGCTGTGAATGATAAATAACTAAAACAACTCACTCTACTTTGCTGGGGCAACT
TAAAATCATTTAGTCAGACATCTGCACCAGATATCCCTTGTGACAAGTCTCACTTGCAATGACT
ACCAGTTTCATTAAAGTGATATCAGAGCATCTATATCTCCAAATTTCACATGATCCAGTTTTTA
ATGTGCTATAATGGTATGCTTGCTGTGCAAAAAAGAGTGCCTGATAGGTTGTGCCTAATCTATT
CCTATACACCTGTTATTTTAGGATTAACTTGTATTACAATTCTCTGTGGGTTTGTTGTACCAGT
TGCTGGGGCTACATGTCATGCCTTTTTTGTAATATATTTAAGTTATGGGGCAATTGCACGTTTG
ACGCTGTTTTGAAAGCTAACTACCAGTTTGACTATTTTCTCAACTTTGCTTATTTGACCCCGCT
TTTCAAAAATGAACATTAGCTATGACCCTATTCTATCAGGCCAACCTAACGGTGTTAACTTAGG
GGCCAAATGCCGTTTATACCCCTGCTCATTTTGAGTATACTCTCTGAGTTTTTATTTATTTGGC
TTAGTTTTGTGTACTCGGTGTATGTGATGAAAGTTTTAATAAATTTGACTTGGAATTGACAAAT
TGTGTGTGAATTTGAGTTAGATTTGATAACTTAAGCAAAGATGACTGAATTTTAATAAAACTTT
GGAAATATATTATCCATCCAATTGCACGCTGAAGAAAGAAAAGCATATATGCTATTTCACATCC
AACAATTGCCCCAAGCAAATCACGAAGCTCAAATTTGTGTCGACCCCAAAGCAAAAAAAAAAAA
AAGTGTGAAATTAATACATGTAAAACAAGAGAGATTATTCAATCAGATCAGCAAAACAAGAGCA
AAGCAACTTCCAGATCTAGTAGAACAAGGTATAGAGAGGAGGTGTGGGTAGAGCAAGAGCGAGC
AAGGATGTGGGCCACATGAGCGCCTCACGCAGGACCTGTGCCTCCGGCTGAGCCAGGCAAGCGT
TGCACGCTTCCGTCCACACGGCCACGCACTCCATCCACACAGCAAGCGCCGGCCCGCGCGTTTC
CCCATCAGCGCCGCACCATCCGCTGCTTATCCACGCATCGCCACCACCGCCTCTACACGCGCCC
GCGCCGCTGCTCCTCTTCCCTCTGTGCGCCGGCGTCGCCGCTCCTCCTTCCGCGCGCCGGAGCT
GGCCCTCCCTCCCTTCCTCCCTCCACACGGCAGCAGCCGTCGCCGCCCATCCCTCCTCCCTCCA
CGCGGCAACAGCCGGCGCCAGCTCCGCTGCTCCTCCTGCCACGTGCTGGAGCCGTCCCTCCCTC
AGCGCGGCAAAAGCCGGCGCGCTGCTCCTCCGCGAACAGGCGCCGCCGCCTGTCCGCGCGCCGG
CGCTGCCCCTCCCTTCCTCTCTCTGTGCGGCAGAAGCCGCCGCCGCTGCTCCTCCATACGCTGG
CGCCCACTGCCGTCCCTCTCTTTGCTTGCCAGCACCGCTGCTCACCTGCTCCTGGTCCCTCCAC
GCGCCGGCCAGCCACGCCAATGTGGGATAAAGGTTGGGATGAGGGGTATTTTGGTCAGTTCATG
CGAGTAAAATTATTTTTTTTTCTTTTTCTAACTGAAACCCTAACGGACTAGTAAAAACAGGGTC
AGATGGTGGCTTCGCTTTTGAAAAACAGGGTCAAATGAGCAAACCTGAAAAAGTAGGGTCAATT
TGGTAGTTCGGCTTCTAAATATAAGCAATTGTCCCTTATTTATGGCGAACAACCATCTATTGTG
AAAATGTGTGCTAAAGCAGACAATAAACATAAATGGGCCTTCTGGCAGATTACTGAGCGATTAT
TTGCGCCCCATCTGTTTTTTTACTAGTCCATGTATGTGAATACAAGAATTCTTCTAAGAATTTT
ATATTGTATGGAATAGATTGATTCTGTAATAATAATTCTGTTAAACTTGTGCAAAAATGATATG
ACCCACACACCCAGCAAATTACATTTACTGACTATGCTGTCGCTGTTTAAGTTGATACACTGTT
TATTTGTAGGTGGCCCTAGTGGATCAGGCAAGACAAGTTTAGCTCAGAAGATGGCCAATATAAT
TGGTTGTGAAGTTATAAGCTTGGAGAGTTATTATAAGCCTGAACAAGTTAGGGATTATAAATAT
GATGAGTATAGCTCATTGGATATAGGTTTGCTTACTAAGGTGATTCCTTTTTATATTGATTCCT
TTTCTGTATTATCATGTGAATTACAAATTCCTGTGCATAACTACTAGAATCTTAAATATTTCAA
GCATGCTTCCAAATTTCTATCTTGTTCTAAAAGTCGATGCAAGGCGCCGCCTAGGCACTTGGTA
GCTGCCACGATTAGGCATTAGATAGTGCATTAGGAGGCTAACCTACTTTGGGCGCTATTGTGTT
GCTATTTTTCTCTATGTAATATGCTTGATAATTTCTTGGATTCTATGATTGGTATGTCCTAGGT
GCCCGCTAGGCACTAGGCACCAGCTCTGCTGACCCTCTAGCACCTAGCGCCTTCTTGAACCATG
TTTCTATCTATACGAGATCACTTGAATTTAGGGTTCAAAATCTGGTGGTGAACAACCACATTAC
CAGATAATTCTTGTATTTACAAAACTGATTTTAATTCAACAGAGACAGAAAATTATTATGTGAC
ATTAATTTGCCAGAAATATGTATTGGTTATATTAAGCATTCAATAGTGGTGATAAAATTATTCT
TACTCCACAGCATTTTGCATGCTGCCTTTTCTTTTCTGGAATCATATGGTTGGGTTCTATAGTG
CCTGTTAAATGACGATTCTCTTATCGCCCCGCAGAACATTATGGAGATCAGAAAGAATCACAAA
GCAGAAGTTCCTTGCTTTGACTTTGAGAAGTGCAAAAGAAAGAAATTCGAGGAGCTTCAAGTCT
CTGAGGAATGTGGAGT
Conservation Information
Conserved circRNAs NA
PMCS 0.204363209
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017