Detail information of Os04g0280200_circ_g.13


General Information
CircRNA Name Os04g0280200_circ_g.13
ID in PlantcircBase osa_circ_023294
Alias NA
Organism Oryza sativa
Position chr4: 11872954-11882171  JBrowse»
Reference genome IRGSP-1.0.38
Type   ui-circRNA
Identification method CIRCexplorer
Parent gene Os04g0280251
Parent gene annotation Hypothetical protein. (Os04t0280251-00)
Parent gene strand -
Alternative splicing Os04g0280200_circ_g.2 Os04g0280200_circ_g.3 Os04g0280200_circ_g.4 Os04g0280200_circ_g.5 Os04g0280200_circ_g.6 Os04g0280200_circ_g.7 Os04g0280200_circ_g.8 Os04g0280200_circ_g.9 Os04g0280200_circ_g.10 Os04g0280200_circ_g.11 Os04g0280200_circ_g.12 Os04g0280200_circ_g.14 Os04g0280200_circ_g.15 Os04g0280200_circ_g.16 Os04g0280200_circ_g.17 Os04g0280200_circ_g.18 Os04g0280200_circ_g.19 Os04g0280200_circ_g.20 Os04g0280200_circ_g.21 Os04g0280200_circ_g.22 Os04g0280200_circ_g.23 Os04g0280200_circ_g.24 Os04g0280200_circ_g.25 Os04g0280200_circ_g.26 Os04g0280200_circ_g.27 Os04g0280200_circ_g.28 Os04g0280200_circ_g.29
Support reads 1
Tissues shoot
Exon boundary   Yes-Yes
Splicing signals   GT-AG
Number of exons covered Os04t0280200-01:13
Os04t0280200-01:13
Os04t0280251-00:12
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TCATTTAATGGTAGCCTATAAGGGAAGGAAATTTTATTATCCAGCCAAAGGTTGATTTTGACAT
TAGTGCCAGCACTGTCGCAGGACTTCTTAAGCTTGGctttattgagatgtaccttaggccacct
tttgcttccgaggaaataaaaattgatgattggattaaagttaggcaatgtggaataagatatt
acttgtct
Assembled circRNA sequence   Yes
Full-length trsnacripts Transcript length: 1569
Transcript exons: 11872954-11873113,11874023-11874187,11874973-11875057,11
875135-11875338,11875885-11875976,11876060-11876102,1187
8215-11878372,11879008-11879118,11881204-11881272,118814
02-11881545,11881669-11881743,11881818-11881994,11882086
-11882171
CTTTATTGAGATGTACCTTAGGCCACCTTTTGCTTCCGAGGAAATAAAAATTGATGATTGGATT
AAAGTTAGGCAATGTGGAATAAGATATTACTTGTCTCTTGGGGATCAGAGGATTGTGGACAAAT
ACTTTATTATCCGTCCAAAAGCTGAGTTTGAGGTTGGACGTACAACTCTGGGAGGATTGTTGGC
CTTAGGATATAGTGTTGTTGTTAGCTTCAAACGTACATGCACATCTGTCAGCAGAGATCAGTTA
TTAATTGCAGCAGAGACTATTGACACCCTAAATGAAACATTTCTGGTGCTAAAAGGTCCAAGTA
GGAAGATTGTTGCAGCAGAAGCTAGAAAGCTCGGTATAAAGGGGCCATGGATTACGAAGTCATA
CCTTGAAATGATCCTAGAGAGCAAAGGGGTCCCACGACTTAATACGCCACCACCAATCTCAAGG
AAATTACTGACTGAAAGTCAAGAAAAAAAAATTGTTGCACCAAAGCCAATTCGTGTTTCGACCG
AAAATGTTGCAAATTTTGATGACTTTGCACAACCATGGACGAGGTCTCCACCCAAAAAGTTTGA
CCAGGAGCCTGTTATGGGAAAATGGCAGTTCAATCAAGATTCTTCTTCAGGAAGTAACATCCAG
TTAGCTCCACTGCCAGACTCCTATGACTTAGATAGGGGTCTTCTCCTATCAGTTCAAGCAATTC
AGGCATTGTTGGAGAACAAAGGATTTCCTGTCATTGTTGGGATTGGTGGCCCTAGTGGATCAGG
CAAGACAAGTTTAGCTCAGAAGATGGCCAATATAATTGGTTGTGAAGTTATAAGCTTGGAGAGT
TATTATAAGCCTGAACAAGTTAGGGATTATAAATATGATGAGTATAGCTCATTGGATATAGGTT
TGCTTACTAAGAACATTATGGAGATCAGAAAGAATCACAAAGCAGAAGTTCCTTGCTTTGACTT
TGAGAAGTGCAAAAGAAAGAAATTCGAGGAGCTTCAAGTCTCTGAGGAATGTGGAGTGGTAATC
TTCGAAGGTGTCTATGCTTTGCATCCTGCTATAAGGAAATCACTGGATTTATGGATTGCAGTTG
TTGGTGGAGTACATTCTCATCTTATTGCAAGAATACAGAGAGACAAGAATCGTGCAGGCTTTTC
TATTTCTCAGAGTGAAATTATGACTACCGTGTTTCCGCTATTTCAGCAATACATAGAACCACAT
CTTATCGATGCTCATCTTAAGATTCAAAATGACTTTGACCCTGTGCTCTCTCCTGAAAGCTCAC
TTTTCGTACTAAAAAGTAAAAAACAGGTATCTTATCAAGACATATTGAAAGTACTCGATGCTAG
TAAAGCCTGCAGCTGTGTCCAGAATTTTACTGATGTGTATCTAAGACTTCCTGGCATACCGTTG
AGTGGACAGCTGACAGAAGGCGAGTGTATTAGGGTCCGAATATGTGAAGGAAGATTTGCACTGT
TAATACGAGAGCCTATAAGGGAAGGAAATTTTATTATCCAGCCAAAGGTTGATTTTGACATTAG
TGCCAGCACTGTCGCAGGACTTCTTAAGCTTGG

Genomic sequence TOO LONG (>5KB) TO SHOW GENOMIC SEQUENCE OF THIS CIRCULAR RNA. PLEASE FIND THE CORRESPONDING GENOMIC SEQUENCE AT DOWNLOAD SECTION.
Conservation Information
Conserved circRNAs NA
PMCS 0.204004291
Functional Information
Coding potential Y
Potential coding position 11872965-11882168(+)
Potential amino acid sequence MYLRPPFASEEIKIDDWIKVRQCGIRYYLSLGDQRIVDKYFIIRPKAEFEVGRTTLGGLLALGY
SVVVSFKRTCTSVSRDQLLIAAETIDTLNETFLVLKGPSRKIVAAEARKLGIKGPWITKSYLEM
ILESKGVPRLNTPPPISRKLLTESQEKKIVAPKPIRVSTENVANFDDFAQPWTRSPPKKFDQEP
VMGKWQFNQDSSSGSNIQLAPLPDSYDLDRGLLLSVQAIQALLENKGFPVIVGIGGPSGSGKTS
LAQKMANIIGCEVISLESYYKPEQVRDYKYDEYSSLDIGLLTKNIMEIRKNHKAEVPCFDFEKC
KRKKFEELQVSEECGVVIFEGVYALHPAIRKSLDLWIAVVGGVHSHLIARIQRDKNRAGFSISQ
SEIMTTVFPLFQQYIEPHLIDAHLKIQNDFDPVLSPESSLFVLKSKKQVSYQDILKVLDASKAC
SCVQNFTDVYLRLPGIPLSGQLTEGECIRVRICEGRFALLIREPIREGNFIIQPKVDFDISAST
VAGLLKLGFIEMYLRPPFASEEIKIDDWIKVRQCGIRYYLSLGDQRIVDKYFIIRPKAEFEVGR
TTLGGLLALGYSVVVSFKRTCTSVSRDQLLIAAETIDTLNETFLVLKGPSRKIVAAEARKLGIK
GPWITKSYLEMILESKGVPRLNTPPPISRKLLTESQEKKIVAPKPIRVSTENVANFDDFAQPWT
RSPPKKFDQEPVMGKWQFNQDSSSGSNIQLAPLPDSYDLDRGLLLSVQAIQALLENKGFPVIVG
IGGPSGSGKTSLAQKMANIIGCEVISLESYYKPEQVRDYKYDEYSSLDIGLLTKNIMEIRKNHK
AEVPCFDFEKCKRKKFEELQVSEECGVVIFEGVYALHPAIRKSLDLWIAVVGGVHSHLIARIQR
DKNRAGFSISQSEIMTTVFPLFQQYIEPHLIDAHLKIQNDFDPVLSPESSLFVLKSKKQVSYQD
ILKVLDASKACSCVQNFTDVYLRLPGIPLSGQLTEGECIRVRICEGRFALLIREPIREGNFIIQ
PKVDFDISASTVAGLLKLGFIEMYLRPPFASEEIKIDDWIKVRQCGIRYYLSLGDQRIVDKYFI
IRPKAEFEVGRTTLGGLLALGYSVVVSFKRTCTSVSRDQLLIAAETIDTLNETFLVLKGPSRKI
VAAEARKLGIKGPWITKSYLEMILESKGVPRLNTPPPISRKLLTESQEKKIVAPKPIRVSTENV
ANFDDFAQPWTRSPPKKFDQEPVMGKWQFNQDSSSGSNIQLAPLPDSYDLDRGLLLSVQAIQAL
LENKGFPVIVGIGGPSGSGKTSLAQKMANIIGCEVISLESYYKPEQVRDYKYDEYSSLDIGLLT
KNIMEIRKNHKAEVPCFDFEKCKRKKFEELQVSEECGVVIFEGVYALHPAIRKSLDLWIAVVGG
VHSHLIARIQRDKNRAGFSISQSEIMTTVFPLFQQYIEPHLIDAHLKIQNDFDPVLSPESSLFV
LKSKKQVSYQDILKVLDASKACSCVQNFTDVYLRLPGIPLSGQLTEGECIRVRICEGRFALLIR
EPIREGNFIIQPKVDFDISASTVAGLLKLGFIEMYLRPPFASEEIKIDDWIKVRQCGIRYYLSL
GDQRIVDKYFIIRPKAEFEVGRTTLGGLLALGYSVVVSFKRTCTSVSRDQLLIAAETIDTLNET
FLVLKGPSRKIVAAEARKLGIKGPWITKSYLEMILESKGVPRLNTPPPISRKLLTESQEKKIVA
PKPIRVSTENVANFDDFAQPWTRSPPKKFDQEPVMGKWQFNQDSSSGSNIQLAPLPDSYDLDRG
LLLSVQAIQALLENKGFPVIVGIGGPSGSGKTSLAQKMANIIGCEVISLESYYKPEQVRDYKYD
EYSSLDIGLLTKNIMEIRKNHKAEVPCFDFEKCKRKKFEELQVSEECGVVIFEGVYALHPAIRK
SLDLWIAVVGGVHSHLIARIQRDKNRAGFSISQSEIMTTVFPLFQQYIEPHLIDAHLKIQNDFD
PVLSPESSLFVLKSKKQVSYQDILKVLDASKACSCVQNFTDVYLRLPGIPLSGQLTEGECIRVR
ICEGRFALLIREPIREGNFIIQPKVDFDISASTVAGLLKL(+)
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017