Detail information of Os04g0280200_circ_g.10


General Information
CircRNA Name Os04g0280200_circ_g.10
ID in PlantcircBase osa_circ_023291
Alias NA,
Organism Oryza sativa
Position chr4: 11872954-11876102  JBrowse»
Reference genome IRGSP-1.0.38
Type   ui-circRNA
Identification method CIRCexplorer, CIRI-long
Parent gene Os04g0280251
Parent gene annotation Hypothetical protein. (Os04t0280251-00)
Parent gene strand -
Alternative splicing Os04g0280200_circ_g.2 Os04g0280200_circ_g.3 Os04g0280200_circ_g.4 Os04g0280200_circ_g.5 Os04g0280200_circ_g.6 Os04g0280200_circ_g.7 Os04g0280200_circ_g.8 Os04g0280200_circ_g.9 Os04g0280200_circ_g.11 Os04g0280200_circ_g.12 Os04g0280200_circ_g.13 Os04g0280200_circ_g.14 Os04g0280200_circ_g.15 Os04g0280200_circ_g.16 Os04g0280200_circ_g.17 Os04g0280200_circ_g.18 Os04g0280200_circ_g.19 Os04g0280200_circ_g.20 Os04g0280200_circ_g.21 Os04g0280200_circ_g.22 Os04g0280200_circ_g.23 Os04g0280200_circ_g.24 Os04g0280200_circ_g.25 Os04g0280200_circ_g.26 Os04g0280200_circ_g.27 Os04g0280200_circ_g.28 Os04g0280200_circ_g.29
Support reads 1
Tissues shoot, root
Exon boundary   Yes-Yes
Splicing signals   GT-AG
Number of exons covered Os04t0280200-01:6
Os04t0280251-00:5
Os04t0280200-01:6
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TCATCACAGTTACGCATTACTGATCTGTAACATATTCCATTAATTGTTGTCTTTCAGGCATTGT
TGGAGAACAAAGGATTTCCTGTCATTGTTGGGATTGctttattgagatgtaccttaggccacct
tttgcttccgaggaaataaaaattgatgattggattaaagttaggcaatgtggaataagatatt
acttgtct
Assembled circRNA sequence   Yes
Full-length trsnacripts Transcript length: 584
Transcript exons: 11872954-11873113,11874973-11875057,11875135-11875338,11
875885-11875976,11876060-11876102
CTTTATTGAGATGTACCTTAGGCCACCTTTTGCTTCCGAGGAAATAAAAATTGATGATTGGATT
AAAGTTAGGCAATGTGGAATAAGATATTACTTGTCTCTTGGGGATCAGAGGATTGTGGACAAAT
ACTTTATTATCCGTCCAAAAGCTGAGTTTGAGATTGTTGCAGCAGAAGCTAGAAAGCTCGGTAT
AAAGGGGCCATGGATTACGAAGTCATACCTTGAAATGATCCTAGAGAGCAAAGGGGTCCCACGA
CTTAATACGCCACCACCAATCTCAAGGAAATTACTGACTGAAAGTCAAGAAAAAAAAATTGTTG
CACCAAAGCCAATTCGTGTTTCGACCGAAAATGTTGCAAATTTTGATGACTTTGCACAACCATG
GACGAGGTCTCCACCCAAAAAGTTTGACCAGGAGCCTGTTATGGGAAAATGGCAGTTCAATCAA
GATTCTTCTTCAGGAAGTAACATCCAGTTAGCTCCACTGCCAGACTCCTATGACTTAGATAGGG
GTCTTCTCCTATCAGTTCAAGCAATTCAGGCATTGTTGGAGAACAAAGGATTTCCTGTCATTGT
TGGGATTG

Genomic sequence CTTTATTGAGATGTACCTTAGGCCACCTTTTGCTTCCGAGGAAATAAAAATTGATGATTGGATT
AAAGTTAGGCAATGTGGAATAAGATATTACTTGTCTCTTGGGGATCAGAGGATTGTGGACAAAT
ACTTTATTATCCGTCCAAAAGCTGAGTTTGAGGTACACAAGTGATCTTATTATCTTGAAATTTG
GGGTTTTACATACAAGTGTAATGTTTGGACGTAACCAAAAACAATAAGGGTGTGCTGATGTGTT
TTGCATATGTACTTTTAGTTTCCTTGCATTTCTCTGCTACTACATATTCATTGACTACAGTACA
ATTCTTACTCCATGTTGCTTTTACCTCCTTAAATATTAATATTTTTTATATTCTGATACTTTGG
GGATAAATCAGCTACTATTGCATAATGTAAATAAACCTATTCGACTTTTCATCATCATGAATCC
ATTTGTTTCTGATCTATCATCTATGAAATTCTTCAAACTAATTCTATACTGATGATAGCGTGTA
GGATCGAATAATTTTCCTGCATTGTAGTTGAAGTGCAGAACCATGCAGTTTATTTCTGTTAACA
AGCAAAAACTGGTAGACAATTCTTTGGTTATGTAATGAAGCTGAAGTACTGCTGGAAACACAAA
TTACAGGGCCAAATACCTGGTGTTCATTGTTGTAGATCCTTTTCAATTTCCCTAGAAACCAATG
CATTTAATCTGTATCTTATGGGGCTTGATGTTACCAGTTGAGCTCATTGCATTTGAAACAAAAG
ATCATACACACAAGACTGTAAGATGAAATCTGAATATTAGTGTTCTATTGGAGTCAAGTTTGTG
CTAGATGTCCCTTTTCCATGGAGGCTGGGTGGGGATCATCTTCTGATAATGTCACTTGGGATGT
ACTACTTCAGTACCTCCGTCCCAAAATGTTGCTATTTCTAGCTATTCACTTGGACAGGTGCATA
TCTAGAAATAGGTACATTTTGGGATGGAGGTAACCTTGTGCTACACAAAAAGTACAATACTGAC
AGGTTTAAGTTTCTGACCTGCTTCATATATTTGAATTTGTCTCAGGTTGGACGTACAACTCTGG
GAGGATTGTTGGCCTTAGGATATAGTGTTGTTGTTAGCTTCAAACGTACATGCACATCTGTCAG
CAGAGATCAGTTATTAATTGCAGCAGAGACTATTGACACCCTAAATGAAACATTTCTGGTGCTA
AAAGGTCCAAGTAGGAAGGTATACACTTTCGGATAGCACATATTTACCTATATGTTGTGGCAAG
AGTCAAATTTTTATGATGACCCAGTTCTCTGTCTTGTACTTTAGTTTACTCTGCAATATTTAAA
CTGTTAAATTTAGTTTCTAAGTTAACTGAACGTTGTCTCCAGTTCCTGTAATTGTTCACTCTAT
CTCCTCGTCATTGTAATATGCATATGCACACTTTTCTATTGTACCAAAAGATATTGTTTTGCTA
TTGCAATGATGCAAACTGTTGATTTCCAAGGATGTGGATGAAGTTTTCATAAACAACTTTGGTT
ACTTCTGGCTTCTATTGAATGTGCACTAACGGATCAGTGTTCCTCATTTTATTTTCACCTTTTC
ATATAAAGCATATTGCAGACTGAGGTGTATCAGATCACCCTTCTGCGACATTGATTAGAAGAAT
TGTCTTCAATTCATTCAATTCATTAACATACAATGGAGTTATGTAGGTTGCTGGAGTTTTACCA
AGAAAATTTTGAAATTGGAGTTGAAATTGTTTTTTTTTTAATTCAGTTGAGTTATGTATTTGCA
GTGAAATTGACTGATGCATAATTTATATTGATCTTGGTTGATAAGTTTATAGCTATGTAAATTT
TCTACCCTTATCTTTTGAAGTGAATAATATGTTTATGAATTCCAAATGATCTTGTTCTGTTCTC
GATAAAACTTCTATGTTGCAACCTTTAGGTTTATTTTGATGTTTGTTGTCATTGAACTTTGGAA
AAAAAATGAATATGTAACTGGCTTGCATAATTTAGATTGTTGCAGCAGAAGCTAGAAAGCTCGG
TATAAAGGGGCCATGGATTACGAAGTCATACCTTGAAATGATCCTAGAGAGCAAAGGTGCAACA
TTTTTTGTTTTCAATGTTTTTTATTTTCAATAATTTCTATCCACTAATAAGTTTCATGTTGGTT
GTCAGGGGTCCCACGACTTAATACGCCACCACCAATCTCAAGGAAATTACTGACTGAAAGTCAA
GAAAAAAAAATTGTTGCACCAAAGCCAATTCGTGTTTCGACCGAAAATGTTGCAAATTTTGATG
ACTTTGCACAACCATGGACGAGGTCTCCACCCAAAAAGTTTGACCAGGAGCCTGTTATGGGAAA
ATGGCAGTTCAATCAAGGTTTTAAACTTGTGCTTTCATTTATGATTTTTGCCTTGCATATTCTG
TTCTTTAATGCTAAAACAAAGGGCATTTTCTCTTGTCATTGGATATCATGTGCAGCCCATTAGG
GCCCATAGAGTGGTCTGCCTCTCTAGGGCTGGTGGTACTGTGCATTAATAGTACCTACTTGGTT
AATTTTCGTGCGTGGATAGTTCATGTCAGGTGGTCTTATTAGAGATAAGGTTAGACTTATAAGT
TAGTTATTTTCTTAATACTAGGGATAGGTTTCTTAATGGTCAAGCTAACACATCTATATGACGG
GGTTTGTATTTTACTCATCAAGCAAGTAATAAACAAGAGTATTTAGTCTTCCCCTTCTCTCCTG
CCCTTGTGGCGTGGCTGCCTCAATGGCACCGCTGCCACTTGGGTCCAGGGATACACAACTAGAA
ATAGGCGCAAGTGCCCTAATCCCAACCATGCCTATTACGGAGTACATTGGAAACCATATTTATT
TATTATTTTTTCTGTAGAAAATCCATTGAATATATTCTTACACTTTTGCAGATTCTTCTTCAGG
AAGTAACATCCAGTTAGCTCCACTGCCAGACTCCTATGACTTAGATAGGGGTCTTCTCCTATCA
GTTCAAGCAATTCAGGTAAATGAAACCACATTCTATTTTTTTCATCACAGTTACGCATTACTGA
TCTGTAACATATTCCATTAATTGTTGTCTTTCAGGCATTGTTGGAGAACAAAGGATTTCCTGTC
ATTGTTGGGATTG
Conservation Information
Conserved circRNAs zma_circ_010277*
PMCS 0.116517887
Functional Information
Coding potential Y
Potential coding position 11872965-11872997(+)
Potential amino acid sequence MYLRPPFASEEIKIDDWIKVRQCGIRYYLSLGDQRIVDKYFIIRPKAEFEVGRTTLGGLLALGY
SVVVSFKRTCTSVSRDQLLIAAETIDTLNETFLVLKGPSRKIVAAEARKLGIKGPWITKSYLEM
ILESKGVPRLNTPPPISRKLLTESQEKKIVAPKPIRVSTENVANFDDFAQPWTRSPPKKFDQEP
VMGKWQFNQDSSSGSNIQLAPLPDSYDLDRGLLLSVQAIQALLENKGFPVIVGIALLRCTLGHL
LLPRK*(+)
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017; this study