Detail information of Os11g0202600_circ_g.1


General Information
CircRNA Name Os11g0202600_circ_g.1
ID in PlantcircBase osa_circ_008782
Alias NA
Organism Oryza sativa
Position chr11: 5182657-5183069  JBrowse»
Reference genome IRGSP-1.0.38
Type   u-circRNA
Identification method CIRCexplorer, CIRI, PcircRNA_finder, circRNA_finder, circseq_cup, find_circ
Parent gene Os11g0202600
Parent gene annotation Similar to OSIGBa0126J24.2 protein. (Os11t0202600-01)
Parent gene strand +
Alternative splicing Os11g0202300_circ_ag.1 Os11g0202300_circ_ag.2 Os11g0202300_circ_ag.3 Os11g0202450_circ_ag.1 Os11g0202600_circ_g.2 Os11g0202600_circ_g.3 Os11g0202600_circ_g.4 Os11g0205500_circ_igg.1 Os11g0204600_circ_g.1 Os11g0204600_circ_g.2 Os11g0204600_circ_g.3 Os11g0204600_circ_g.4 Os11g0205500_circ_g.1
Support reads 9/10
Tissues root/root, seed, pistil
Exon boundary   Yes-Yes
Splicing signals   GT-AG
Number of exons covered Os11t0202600-01:2
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TCTCTTGTGTAGAATGATGCTGCTTATGAGTGGAGAATTACCCAATGCCTGATCAATGGAGTTT
CGTTGGACTTCAAGGTTTATGACCAAAATCGTAAACatctgaaatgtcctcgagtgaaggatct
aagtgggtttcgcgatgtgtctttggctcccctccgaatctttctgagctagatgagttggcgg
ttctttat
Assembled circRNA sequence   Yes
Full-length trsnacripts Transcript length: 323
Transcript exons: 5182657-5182891,5182982-5183069
ATCTGAAATGTCCTCGAGTGAAGGATCTAAGTGGGTTTCGCGATGTGTCTTTGGCTCCCCTCCG
AATCTTTCTGAGCTAGATGAGTTGGCGGTTCTTTATCATGAACAAGCTGCAAGGAACACTAGAG
ACTACGTTAGAAGCTGGATCTGCCCCGACTGTAGGAAGGAGTACAAGCCTATTCAAAACATGCT
TGTTGATTTGCCGCCTTTCAGCTGTGATGACTGTGGGTTGAAGAATGATGCTGCTTATGAGTGG
AGAATTACCCAATGCCTGATCAATGGAGTTTCGTTGGACTTCAAGGTTTATGACCAAAATCGTA
AAC

Genomic sequence ATCTGAAATGTCCTCGAGTGAAGGATCTAAGTGGGTTTCGCGATGTGTCTTTGGCTCCCCTCCG
AATCTTTCTGAGCTAGATGAGTTGGCGGTTCTTTATCATGAACAAGCTGCAAGGAACACTAGAG
ACTACGTTAGAAGCTGGATCTGCCCCGACTGTAGGAAGGAGTACAAGCCTATTCAAAACATGCT
TGTTGATTTGCCGCCTTTCAGCTGTGATGACTGTGGGTTGAAGGTGAAATTTTTTCTCATCATC
ATTTTCTTCTAACCATGACTCTCTTTTCTTGTATTTTTTCTCCGCTAACCATATACCTCTCTTG
TGTAGAATGATGCTGCTTATGAGTGGAGAATTACCCAATGCCTGATCAATGGAGTTTCGTTGGA
CTTCAAGGTTTATGACCAAAATCGTAAAC
Conservation Information
Conserved circRNAs NA
PMCS 0.590626405
Functional Information
Coding potential Y
Potential coding position 5182665-5182733(+)
5182660-5182735(-)
Potential amino acid sequence MSSSEGSKWVSRCVFGSPPNLSELDELAVLYHEQAARNTRDYVRSWICPDCRKEYKPIQNMLVD
LPPFSCDDCGLKNDAAYEWRITQCLINGVSLDFKVYDQNRKHLKCPRVKDLSGFRDVSLAPLRI
FLS*(+)
MFTILVINLEVQRNSIDQALGNSPLISSIILQPTVITAERRQINKHVLNRLVLLPTVGADPASN
VVSSVPCSLFMIKNRQLI*(-)
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Ye et al., 2016;Chu et al., 2017