Detailed infomation of each circRNA
General Information | |
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CircRNA Name | Os11g0202600_circ_g.1 |
ID in PlantcircBase | osa_circ_008782 |
Alias | NA |
Organism | Oryza sativa |
Position | chr11: 5182657-5183069 JBrowse» |
Reference genome | IRGSP-1.0.38 |
Type | u-circRNA |
Identification method | CIRCexplorer, CIRI, PcircRNA_finder, circRNA_finder, circseq_cup, find_circ |
Parent gene | Os11g0202600 |
Parent gene annotation |
Similar to OSIGBa0126J24.2 protein. (Os11t0202600-01) |
Parent gene strand | + |
Alternative splicing | Os11g0202300_circ_ag.1 Os11g0202300_circ_ag.2 Os11g0202300_circ_ag.3 Os11g0202450_circ_ag.1 Os11g0202600_circ_g.2 Os11g0202600_circ_g.3 Os11g0202600_circ_g.4 Os11g0205500_circ_igg.1 Os11g0204600_circ_g.1 Os11g0204600_circ_g.2 Os11g0204600_circ_g.3 Os11g0204600_circ_g.4 Os11g0205500_circ_g.1 |
Support reads | 9/10 |
Tissues | root/root, seed, pistil |
Exon boundary | Yes-Yes |
Splicing signals | GT-AG |
Number of exons covered | Os11t0202600-01:2 |
Conservation Information | |
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Conserved circRNAs | NA |
PMCS | 0.590626405 |
Functional Information | |
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Coding potential | Y |
Potential coding position |
5182665-5182733(+) 5182660-5182735(-) |
Potential amino acid sequence |
MSSSEGSKWVSRCVFGSPPNLSELDELAVLYHEQAARNTRDYVRSWICPDCRKEYKPIQNMLVD LPPFSCDDCGLKNDAAYEWRITQCLINGVSLDFKVYDQNRKHLKCPRVKDLSGFRDVSLAPLRI FLS*(+) MFTILVINLEVQRNSIDQALGNSPLISSIILQPTVITAERRQINKHVLNRLVLLPTVGADPASN VVSSVPCSLFMIKNRQLI*(-) |
Sponge-miRNAs | NA |
circRNA-miRNA-mRNA network | VISUALIZATION |
Potential function description | NA |
Other Information | |
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References | Ye et al., 2016;Chu et al., 2017 |