Detail information of 4_circ_ag.2


General Information
CircRNA Name 4_circ_ag.2
ID in PlantcircBase ath_circ_032017
Alias NA
Organism Arabidpsis thaliana
Position chr4: 11492869-11497390  JBrowse»
Reference genome TAIR10.38
Type   ag-circRNA
Identification method find_circ
Parent gene NA
Parent gene annotation NA
Parent gene strand NA
Alternative splicing 4_circ_ag.3 4_circ_ag.4 4_circ_ag.5 4_circ_ag.6 4_circ_ag.7 4_circ_ag.8 4_circ_ag.9 4_circ_ag.10 AT4G21650_circ_g.1 AT4G21650_circ_g.2 AT4G21650_circ_g.3
Support reads 4
Tissues inflorescences
Exon boundary   Yes-Yes
Splicing signals   CT-AC
Number of exons covered NA
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TCAGGGTTTACAAGTCCTCCTCCATAGTCAAATGGATCTGCAAGCTTCTTGTTTGATCCTTGAG
CAAAAATGGGTTCTCCAGATGGACTTGTTCTCCAAGctgttgtgaccaaagctgatctcattgc
agcaggagaccagttagggtgtagtgattttaggagagcaatgattccagaaacaacaggagtc
gacatcga
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CTGTTGTGACCAAAGCTGATCTCATTGCAGCAGGAGACCAGTTAGGGTGTAGTGATTTTAGGAG
AGCAATGATTCCAGAAACAACAGGAGTCGACATCGATGTCCCTGAATAAAGTCCAAATCCGTTG
AACGCATCAGGATCAAGCGGACTCACTGCCGCGAGTATGCTAACACCCGGAGCTGCTATATCAG
GCTACAGAATAAAGCTTGACCACATAATTACTCAAAAACGTTTAACCACACTTTGAAGTAAACA
TAGATAAGAGACACAATGGATTTATAACCTTGAGAATGGCTGGTGAAACAGAATTAGGCCCTCT
AGATGAGAATTCAGCAACCTTAGTCATTGCAGGCTGACCGTTTAGGGTCGTAGCAGCACTAATT
CTCACAGTGGGAGATCTGTAGGTTTGACGGATCAATAATGTATATATTTAAGAAATGTAAATGG
ACTTATGTAACAGAGTGTTTTGGCATCAAGATAGAGAGACCTGGTAGTACGTATGTATTGTAAA
ATGTGAGTTCCAATCTCATAATCTGTGAAAATGTACGGTATAGAGTTGTATCGAGCAAGAAGAT
CATCAGGCTTTTTGGCTAAGATGACTGCTACTACACCTCTCCCTGCAATTGAAGAAGGATGAGT
ACTATCGAATTCAAGAATTGTTTTCCCCTTCACATCAACATTATGATCTGAATCCAAGAATGCT
AAACTGGTTGAAATCTCCGGTCCAGTGAACAGAGATTCAGCCTAATTAGATACCAAAAAAAAAC
AACAAGTTAAAAAAATAACTCCAAACGTTCAACTATTTAACTAATTTGAGTTTTTTGGGTGTAA
AACGTACGAAGAGGGTTTGGTTATTCCCAAGTGTGATCTTTGTAGGAAAAGACCGGTCAAGAGT
AGTAGCAGCAACAGTCAAGAGCCAAGGAGCAGCATTGGTAATATTCTGAGCACCAGGCCCATCA
TTACCCCCCGCAGCCACAACTGTAATCCCTTTGGCCACCGCATGAAAAGCCGCGATAAAGTCGA
CCGAATCGACCTCGGAATTCTCGGGAATTCCCGCCCCAATAGAAACCGACAAAACATCTACTTG
ATCATGTATAGCATCATCAAAAGCCTTCCACATATCAGCAACTGTGCATATACCATCGTATCCC
ACTACATTCCAACATACCTTGTATGAGGCTATTCGGGCCCGAGGGGCTCCACCTCGGACCGTAC
CTGACAAGATCCCACATCCGTTACGAATATTTTCTTATAAAACCGGTACCTTGACTCTTAAGTT
AACTTTTTTAGTGAATGAAATCCAAAAGTTTTTGCTATATCAGTACCTCGGGCTAGGCCATAGA
AGCTCACGTTGGGAACGAATGAGCCACCGGCTATTGTGGCTGTATGCGTGCCGTGACCAATTGC
ATCTCTGTTGGATTTGAAATCTTGGATGATTGTTCTGTTGAATTTCCCTCCAGTCTCGGCGAGT
AGACCGCTTAGATAGTACTTTGCTCCTATTAGCTTGTTGTTGCAATGTATTTTGGCGTTAAACT
GTTCTCCTGATTCACATTTTCCTCTCCAACGCTGAGGTATTGGTCCAAGACCATGATCGTTGAA
GACCTTTGACTCCGGCCATATTCCTGCATAGATATACATACATACATGATGTGAATCAAGGAGA
AAGATAGAGATAGAGTTATATTTAGAGAGCGAGAGAAAGACCGGTATCAACGACGCCGATGATA
GCTTCACTGCCCATGTTGGTTTCATGAAGTAGACCTTTTGCAGATGATGATGAAGAAAAAGAAG
TTGGATTTGGAGAGAGGCCAAGATGATCCCAAGTTCTTGTGGTTTTCAGTTTCAGAATCCGGTT
CGGGATAACATGGATTACTTCTGGATGCTCTGTGTTTATGTACAAAAATCTTCAATGCTCAAAG
ATATGAAACTTTCTTAAATGTGAGTTTGAGTTTTGTTGAGTACCTGAGATTTTCTTTGCTTGTG
AAGATGTAAGAAGCGCCGCGAAACCAGAGAATCCATATTGGTAGCTGTAGATCAGCGAGTTATG
TGCGTCGTCTTTGCTGTATATATCATTAGAGACACAAGTAAGAGAAGTGCTCCTAACAAAACAA
AAGATAAAAACAGAGGAAGGTCCAAGTTCCGTGAAGAAACAGAGTATGGCGACGGCAGTTTTCT
TGGCACCCAAGAAAACGTATGTAATATATTATTATCAATTCTAGCAGATGTCTTGAATACATAA
TGGAGATAAATTATATATATGAAAAGTTTAATAGGTTAATGTTTAATATAGAGATTTTATCTTG
GAAGATGATTAAAGTAAAGTACCTTTGAAGAAGTGATTCAAGCATTTGATGATGAGAAGCTGTG
AAAAGTTCTGGATCATCGTGTTCCCTTTCCCCAAGATACACTATATAAACCTAATAAATTGGCC
AAAAAAAACACCGGAAAAGTTTAGAAATATCAGTAAACTCTTAGCGATTTTCGCAAATAGATAC
CTTCTTTTCTCTAATTACATACTTTGCTGTCACTGTCTGAGGCTCCTTCAGCTGCAAGAAAACT
CACCCCTGTCTTAGGAAATAGGACCAAAGCAATCGACAATAGAAACACAAGTGTGGATAAACAG
TTCTCCATTGTCTGAAGTGAGAAGTGTGTGCATGTGTGACTGTGTGGTATAGAAGCTTTTTTAT
ATACATATAAATAGTAAATAATTCGTCTTAAGCAATAAAATTTGGGGTTAGATTCGAATTTGGT
TCGGATTCAATTATTGGTTTATTCAACTTATTATGGTAATTCCGAATCAGACCGGTTTTATCTC
TCGTGTAGCGTTACTGATATTCCCACCATAACTTTTTGGCTCAGTTTTAACTCTTACAATTGTC
GTCTTTCTTATTATAGATATACGAATAGTGTACCTAATTATATATATTACCTAATTATAATTCA
AATGAGTATAAGACTATAAGAGGATATCAATAATTTCTAACTAAATGAGTAGGTTAGGTAACTG
TAATTAAGAAGTTGGTAGATCATGATTGACTGAATTACTCAATTTAGTATAGAATGATTATATT
CTGAACTTTTGAAATATAGAAGACTCTACACCGAAATATAGGATCACAGGACAGCAAACCAATT
CCGGATTTTTTTTTAATGTGTATATCGTTTTGAATTTGTTTTTTTTACACACTTTATACTTTAT
AGATTATAAAATGGTGACCACGGATAGTTGAATCTCTTTGATAGATAGTGGAATATTCCAAAGG
TAGTACGATGAAACTAATTATATGGCAATCAAAGAATCGTAATGTGTGCAATCTTTGCTTAATA
TATAACTAACTATTTAACAAAATACAGAATCAAAAATTATATGATAAATCAAACAATCGTAATG
TATATGTGCAAATTTTGCTTAAAACAGAATTACGTTTTCACGTACATTACATGATTCGCCACAT
TATGTTAATTTGGCTATAAATTAGTTATTAAAGTATATAGACTCAACATGAAAAAACTCGGTCA
AGGGAGATTAAAATGGCAAACATTAATCATTGTTAAGCCTTTTAAGACTTTCACTATGGATTGT
AAGAAGGAGTGTATTGCTTATTGTTAAGATATAATTAAGATCACATCTTGATTCTTGATCTTAA
TAATATATAGTCATTATGATGATTATATATTTGCTATGTTATGTTATAGCTATAGATTATGAGA
TCATGAGGATCCTTTTGTCTCGATTCGGTTTTAGTAGTTTTTATTATATGGATAATATATGGTT
GTGATGAATAGATGAGGAAAGATTACTGTTATCTCTATTTGTATGTTTGTGTAAGAGATTCTAA
GTTTGTGATTTGATATTTTATTATGATGATGATCTTGAATCTTGATTTGACACTTTGAACTTAG
AGTTGCAAGAGTAGTTACATAAGAACAAACACAATGAGCATCATATATATGGCTCTTTTTATTA
CATCGAAATCGTTGTCTTCACTGAGACAGGGATTGTAACATCATGAACACCATCAGTCCATGTT
AAGCTTCCAAAGAAGTAGCCACTGTTGACTTTATGACTCGTTTTAGCCTTAACCGAGAAAGTGA
GTACTCTCTTTGCTGCAGACTTAAACACGAGTATGGTCGGGTTCACGGTGAGAGTTATACCCAG
AGGAGACTCGATCACGGCTCTATAGACTGACTTGATGGGTCCAACATTGGTTACAGTTCTTGTG
AGTGTGACTTCTTTCTCAAGATTTGGAATTGTGATTGAAGGTAAGTTGATATCAAGCATTGATG
GCTTAGGAATTGGGCATTTAGTCTTTTTACCGAGCACACGAGAGATTGAGGAGTCGTTGTAACC
CGCAGAACACATATAATTGATGTAATCTTTGATCCCCATATCGTAGACAAGTCCTGGTTTAGCA
GCTTTTTCAGGGTTTACAAGTCCTCCTCCATAGTCAAATGGATCTGCAAGCTTCTTGTTTGATC
CTTGAGCAAAAATGGGTTCTCCAGATGGACTTGTTCTCCAAG
Conservation Information
Conserved circRNAs NA
PMCS 0.29806752
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017