Detail information of 4_circ_ag.7


General Information
CircRNA Name 4_circ_ag.7
ID in PlantcircBase ath_circ_032022
Alias NA
Organism Arabidpsis thaliana
Position chr4: 11494195-11499090  JBrowse»
Reference genome TAIR10.38
Type   ag-circRNA
Identification method find_circ
Parent gene NA
Parent gene annotation NA
Parent gene strand NA
Alternative splicing 4_circ_ag.2 4_circ_ag.3 4_circ_ag.4 4_circ_ag.5 4_circ_ag.6 4_circ_ag.8 4_circ_ag.9 4_circ_ag.10 AT4G21650_circ_g.1 AT4G21650_circ_g.2 AT4G21650_circ_g.3
Support reads 3
Tissues inflorescences
Exon boundary   Yes-Yes
Splicing signals   CT-AC
Number of exons covered NA
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   CACATATCAGCAGATGAGCATATACCGCCCCATCCCACTACATTCCAACATGCCTTGTACGAGG
CTATGCGGGCCCGAGGGGCTCCACCTCGGACCGTACctcgggctaggccatagaagctcacgtt
gggaacgaatgagccaccggctattgtggctgtatgcgtgccgtgaccaattgcatctctgttg
gatttgaa
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CTCGGGCTAGGCCATAGAAGCTCACGTTGGGAACGAATGAGCCACCGGCTATTGTGGCTGTATG
CGTGCCGTGACCAATTGCATCTCTGTTGGATTTGAAATCTTGGATGATTGTTCTGTTGAATTTC
CCTCCAGTCTCGGCGAGTAGACCGCTTAGATAGTACTTTGCTCCTATTAGCTTGTTGTTGCAAT
GTATTTTGGCGTTAAACTGTTCTCCTGATTCACATTTTCCTCTCCAACGCTGAGGTATTGGTCC
AAGACCATGATCGTTGAAGACCTTTGACTCCGGCCATATTCCTGCATAGATATACATACATACA
TGATGTGAATCAAGGAGAAAGATAGAGATAGAGTTATATTTAGAGAGCGAGAGAAAGACCGGTA
TCAACGACGCCGATGATAGCTTCACTGCCCATGTTGGTTTCATGAAGTAGACCTTTTGCAGATG
ATGATGAAGAAAAAGAAGTTGGATTTGGAGAGAGGCCAAGATGATCCCAAGTTCTTGTGGTTTT
CAGTTTCAGAATCCGGTTCGGGATAACATGGATTACTTCTGGATGCTCTGTGTTTATGTACAAA
AATCTTCAATGCTCAAAGATATGAAACTTTCTTAAATGTGAGTTTGAGTTTTGTTGAGTACCTG
AGATTTTCTTTGCTTGTGAAGATGTAAGAAGCGCCGCGAAACCAGAGAATCCATATTGGTAGCT
GTAGATCAGCGAGTTATGTGCGTCGTCTTTGCTGTATATATCATTAGAGACACAAGTAAGAGAA
GTGCTCCTAACAAAACAAAAGATAAAAACAGAGGAAGGTCCAAGTTCCGTGAAGAAACAGAGTA
TGGCGACGGCAGTTTTCTTGGCACCCAAGAAAACGTATGTAATATATTATTATCAATTCTAGCA
GATGTCTTGAATACATAATGGAGATAAATTATATATATGAAAAGTTTAATAGGTTAATGTTTAA
TATAGAGATTTTATCTTGGAAGATGATTAAAGTAAAGTACCTTTGAAGAAGTGATTCAAGCATT
TGATGATGAGAAGCTGTGAAAAGTTCTGGATCATCGTGTTCCCTTTCCCCAAGATACACTATAT
AAACCTAATAAATTGGCCAAAAAAAACACCGGAAAAGTTTAGAAATATCAGTAAACTCTTAGCG
ATTTTCGCAAATAGATACCTTCTTTTCTCTAATTACATACTTTGCTGTCACTGTCTGAGGCTCC
TTCAGCTGCAAGAAAACTCACCCCTGTCTTAGGAAATAGGACCAAAGCAATCGACAATAGAAAC
ACAAGTGTGGATAAACAGTTCTCCATTGTCTGAAGTGAGAAGTGTGTGCATGTGTGACTGTGTG
GTATAGAAGCTTTTTTATATACATATAAATAGTAAATAATTCGTCTTAAGCAATAAAATTTGGG
GTTAGATTCGAATTTGGTTCGGATTCAATTATTGGTTTATTCAACTTATTATGGTAATTCCGAA
TCAGACCGGTTTTATCTCTCGTGTAGCGTTACTGATATTCCCACCATAACTTTTTGGCTCAGTT
TTAACTCTTACAATTGTCGTCTTTCTTATTATAGATATACGAATAGTGTACCTAATTATATATA
TTACCTAATTATAATTCAAATGAGTATAAGACTATAAGAGGATATCAATAATTTCTAACTAAAT
GAGTAGGTTAGGTAACTGTAATTAAGAAGTTGGTAGATCATGATTGACTGAATTACTCAATTTA
GTATAGAATGATTATATTCTGAACTTTTGAAATATAGAAGACTCTACACCGAAATATAGGATCA
CAGGACAGCAAACCAATTCCGGATTTTTTTTTAATGTGTATATCGTTTTGAATTTGTTTTTTTT
ACACACTTTATACTTTATAGATTATAAAATGGTGACCACGGATAGTTGAATCTCTTTGATAGAT
AGTGGAATATTCCAAAGGTAGTACGATGAAACTAATTATATGGCAATCAAAGAATCGTAATGTG
TGCAATCTTTGCTTAATATATAACTAACTATTTAACAAAATACAGAATCAAAAATTATATGATA
AATCAAACAATCGTAATGTATATGTGCAAATTTTGCTTAAAACAGAATTACGTTTTCACGTACA
TTACATGATTCGCCACATTATGTTAATTTGGCTATAAATTAGTTATTAAAGTATATAGACTCAA
CATGAAAAAACTCGGTCAAGGGAGATTAAAATGGCAAACATTAATCATTGTTAAGCCTTTTAAG
ACTTTCACTATGGATTGTAAGAAGGAGTGTATTGCTTATTGTTAAGATATAATTAAGATCACAT
CTTGATTCTTGATCTTAATAATATATAGTCATTATGATGATTATATATTTGCTATGTTATGTTA
TAGCTATAGATTATGAGATCATGAGGATCCTTTTGTCTCGATTCGGTTTTAGTAGTTTTTATTA
TATGGATAATATATGGTTGTGATGAATAGATGAGGAAAGATTACTGTTATCTCTATTTGTATGT
TTGTGTAAGAGATTCTAAGTTTGTGATTTGATATTTTATTATGATGATGATCTTGAATCTTGAT
TTGACACTTTGAACTTAGAGTTGCAAGAGTAGTTACATAAGAACAAACACAATGAGCATCATAT
ATATGGCTCTTTTTATTACATCGAAATCGTTGTCTTCACTGAGACAGGGATTGTAACATCATGA
ACACCATCAGTCCATGTTAAGCTTCCAAAGAAGTAGCCACTGTTGACTTTATGACTCGTTTTAG
CCTTAACCGAGAAAGTGAGTACTCTCTTTGCTGCAGACTTAAACACGAGTATGGTCGGGTTCAC
GGTGAGAGTTATACCCAGAGGAGACTCGATCACGGCTCTATAGACTGACTTGATGGGTCCAACA
TTGGTTACAGTTCTTGTGAGTGTGACTTCTTTCTCAAGATTTGGAATTGTGATTGAAGGTAAGT
TGATATCAAGCATTGATGGCTTAGGAATTGGGCATTTAGTCTTTTTACCGAGCACACGAGAGAT
TGAGGAGTCGTTGTAACCCGCAGAACACATATAATTGATGTAATCTTTGATCCCCATATCGTAG
ACAAGTCCTGGTTTAGCAGCTTTTTCAGGGTTTACAAGTCCTCCTCCATAGTCAAATGGATCTG
CAAGCTTCTTGTTTGATCCTTGAGCAAAAATGGGTTCTCCAGATGGACTTGTTCTCCAAGCTAC
AAAAGAAACAGATCGATTGGTTCGTGATGGTTTGTTTATGAAAAAGAAGAATAAGAAGAAGCAA
GAACCTGTTGTGACCAAAGCTGATCTCATTGCAGCAGGAGACCACTTAGGGTGTAGAGATTTTA
GGAGAACTATGATTCCAGAAACAACAGGAGTCGACATCGATGTCCCTGAATGAAGTTTAAATCC
GTTGAACGCACCAGGATCAAGCGGACTCACTGCCGCGAGTATGCTAACACCCGGTGCTGCTATA
TCAGGCTACAAAGTAAAAACATGACCAGATATATAAGACCATGTACATAGGAGATTTTTTGTGG
GTATCATAAGCCTAAAAATATTAAATTAATAGACAAAGCAACTGATTTGGACTTGAGAAGTATC
ACTGGAGTGATAATTTCTGATACCAGTCTCTAATGACGTGGCGGCTTGTAATTAGTCGAAAAAA
CGCGTTTTTGTGGAAAATGAGAGAAAAAAAAATTATTTGCTCTCGACTATCGCTCCAGTAGCCG
ATGCTAGCATGTAATTTCGATTTTACAAATAAATTTTGTTTTTTGATGATACCAATACTGGTCT
TACCACTGGAAAGAGATTATTATGAGTATCATAAAAAATCTCAAACAATAAACAAGCATTAAAA
TTAATAATAAAAAATTGTTGATGATACTCTATGAGTACCAACTATGTGCATACTCTAACAAGTT
TACACAAAAAGGATTCAACTTTTAAAGTAAATATAGATAAGAGGCTTTATAACCTTGAGAATGG
CTGGTGAAACCGAGTTAGGCCCTCTAGATGAGAATGCAGCAACCTTAGGCGTTGCAGGCTGGCC
GGTTAGTGTTGTGGCCGCACTAATTCTCACAGTGGGAGATCTGTTGGTTTGACGGATCAATAAT
GTATATATTCCAGAAATGTATATGAACTTATATAAGTATGTAACAGAGTGTTTTGGCATCAAGA
TAGAGAGACCTGGTAGTACGTATGTATTGTAAAATGTGAGTTCCAATCTCATAATCTGTGAAAA
TGTAAGAATTGTCTGGGGCAGGACGATCATCAGGCTTTTTGGCTAAGATGACTGCTACTACACC
TCTCCCTGCAATTGAAGAAGGATGAGTACTATCGAATTCAAGAATTGTTTTCCCCTTCACATCA
ACATCATCATCCAAGAAAGCTAAACCCGTTGAAATTTCCGGTCCAGTGAACAAAGATTCAGCCA
AATTAGATACCAACAAAAAACAACAAGTTAATTTGAGCTTTTGGTAGCAAAAACAATAAGGTCG
AACTTTGAACTATTTTCTCAAAGTTATTTTTGGTATCAAACGTACGAAGAAAGTTTGGTTATTC
CCAAGTGTGATCTTTGTAGGAAAAGACCGGTCAAGAGTAGTTGCAGCAACAGTCAAGAGCCATG
GAGCAACATTGCAAATAGTCTGAGCACCAGACCCATCATTTCCCGCCGCAGCTACAACTGTAAT
CCCTTTAGCCACCGCATGAAAAGCCGCGATAAAGTCGACCCTCTCGGAATCCTCGGGAATACTC
GCCCCAATAGAAACCGACAAAACATCTACCTGATCATGTATAGCATCATCATAAGCCTTCCACA
TATCAGCAGATGAGCATATACCGCCCCATCCCACTACATTCCAACATGCCTTGTACGAGGCTAT
GCGGGCCCGAGGGGCTCCACCTCGGACCGTAC
Conservation Information
Conserved circRNAs NA
PMCS 0.348368067
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017