Detail information of 4_circ_ag.9


General Information
CircRNA Name 4_circ_ag.9
ID in PlantcircBase ath_circ_032024
Alias 4:11497463-11501870
Organism Arabidpsis thaliana
Position chr4: 11497463-11501870  JBrowse»
Reference genome TAIR10.38
Type   ag-circRNA
Identification method find_circ; CIRI2
Parent gene NA
Parent gene annotation NA
Parent gene strand NA
Alternative splicing 4_circ_ag.2 4_circ_ag.3 4_circ_ag.4 4_circ_ag.5 4_circ_ag.6 4_circ_ag.7 4_circ_ag.8 4_circ_ag.10 AT4G21650_circ_g.1 AT4G21650_circ_g.2 AT4G21650_circ_g.3
Support reads 3
Tissues root
Exon boundary   NA-NA
Splicing signals   CT-AC
Number of exons covered NA
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TCAGGGTTTACAAGTCCTCCTCCATAGTCAAATGGATCTGCAAGCTTCTTGTTTGATCCTTCAG
CAAAGATTGGTTCTCCAGATGGACTTGTCCTCCAAGctgttgtgaccaaagctgatctcattgc
agcaggagaccacttagggtgtagagattttaggagaactatgattccagaaacaacaggagtc
gacatcga
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CTGTTGTGACCAAAGCTGATCTCATTGCAGCAGGAGACCACTTAGGGTGTAGAGATTTTAGGAG
AACTATGATTCCAGAAACAACAGGAGTCGACATCGATGTCCCTGAATGAAGTTTAAATCCGTTG
AACGCACCAGGATCAAGCGGACTCACTGCCGCGAGTATGCTAACACCCGGTGCTGCTATATCAG
GCTACAAAGTAAAAACATGACCAGATATATAAGACCATGTACATAGGAGATTTTTTGTGGGTAT
CATAAGCCTAAAAATATTAAATTAATAGACAAAGCAACTGATTTGGACTTGAGAAGTATCACTG
GAGTGATAATTTCTGATACCAGTCTCTAATGACGTGGCGGCTTGTAATTAGTCGAAAAAACGCG
TTTTTGTGGAAAATGAGAGAAAAAAAAATTATTTGCTCTCGACTATCGCTCCAGTAGCCGATGC
TAGCATGTAATTTCGATTTTACAAATAAATTTTGTTTTTTGATGATACCAATACTGGTCTTACC
ACTGGAAAGAGATTATTATGAGTATCATAAAAAATCTCAAACAATAAACAAGCATTAAAATTAA
TAATAAAAAATTGTTGATGATACTCTATGAGTACCAACTATGTGCATACTCTAACAAGTTTACA
CAAAAAGGATTCAACTTTTAAAGTAAATATAGATAAGAGGCTTTATAACCTTGAGAATGGCTGG
TGAAACCGAGTTAGGCCCTCTAGATGAGAATGCAGCAACCTTAGGCGTTGCAGGCTGGCCGGTT
AGTGTTGTGGCCGCACTAATTCTCACAGTGGGAGATCTGTTGGTTTGACGGATCAATAATGTAT
ATATTCCAGAAATGTATATGAACTTATATAAGTATGTAACAGAGTGTTTTGGCATCAAGATAGA
GAGACCTGGTAGTACGTATGTATTGTAAAATGTGAGTTCCAATCTCATAATCTGTGAAAATGTA
AGAATTGTCTGGGGCAGGACGATCATCAGGCTTTTTGGCTAAGATGACTGCTACTACACCTCTC
CCTGCAATTGAAGAAGGATGAGTACTATCGAATTCAAGAATTGTTTTCCCCTTCACATCAACAT
CATCATCCAAGAAAGCTAAACCCGTTGAAATTTCCGGTCCAGTGAACAAAGATTCAGCCAAATT
AGATACCAACAAAAAACAACAAGTTAATTTGAGCTTTTGGTAGCAAAAACAATAAGGTCGAACT
TTGAACTATTTTCTCAAAGTTATTTTTGGTATCAAACGTACGAAGAAAGTTTGGTTATTCCCAA
GTGTGATCTTTGTAGGAAAAGACCGGTCAAGAGTAGTTGCAGCAACAGTCAAGAGCCATGGAGC
AACATTGCAAATAGTCTGAGCACCAGACCCATCATTTCCCGCCGCAGCTACAACTGTAATCCCT
TTAGCCACCGCATGAAAAGCCGCGATAAAGTCGACCCTCTCGGAATCCTCGGGAATACTCGCCC
CAATAGAAACCGACAAAACATCTACCTGATCATGTATAGCATCATCATAAGCCTTCCACATATC
AGCAGATGAGCATATACCGCCCCATCCCACTACATTCCAACATGCCTTGTACGAGGCTATGCGG
GCCCGAGGGGCTCCACCTCGGACCGTACCTGATAAGAATCCCACATCCGTTAAGAAAAATAAAT
AATGTCTTATAAAACCGGTACCTTGACTCTTAAGTTAACCTTTTTAGTGAATAAAATCCATAAG
GTTTTTGCTATATCACTACCTCGTGCTAGACCATAAAAGCTTGCGTTGGGAACAAATGAGCCAC
CGGCTATTGTGGCTGTATGCGTGCCGTGACCGGTTGCATCTCTGTTGGATTTGAAATCACGGAT
GATTATTCTGTTAAATTTTCCTCCATTCATGGCGAGTAGACCGCTTTGATAGTACTTAGCTCCT
ATAAGCTTTTTGTTGCAATGCATTGTGGCGTTAAACTTTTCTCCTGATCTACATTTTCCTCTCC
AACGCTTAGGTATTGGTCCAAGACCTTGATCGTTGAAGACCTTTGACTCTGGCCATATCCCTGC
ATATACATACATACATGATGTGCGCCAAGGAGAGAGAGCGAGAGAGTTAGATTTAGAGAGAGAG
AGAGAGTTAGATTTAGAGAGAGAGAGAGAGAGAGAGACCTGAATCAACGACGCCGATGATAGCT
TCACTGCCCATGCTGGTGTTATGAAGTAGACCTTTCGCTTTTGCAGATGATGATGAAGAAAAAG
AAGTTGGAATTGGAGAGAGGCCAAGATGATCCCAAATTCTTGTGGTTTTCAGTTTCAGAATCCG
GTTTGGTATAACATGGATTACTTCTGGATGTTCTGTGTTTATATACAAGATTCTGGATTAGGAA
CCAAAAAATCTTCAATGCTCGAAGACCTTACATGTGAGTTTTAGTTTTGTTTGCGTACCTGAGA
TTTTCTTTGCTTGTGAAGATGTAAGAAGCGCCGCGAAACCAGAGAATCCATGCTGGTAGCTGTA
GATCATGGAGTTATGTGCGTCTTCTTTGCTGTATATATTATTAGAGACACAAGTATGAGAAGAG
CTCGTACCAAACAAAGGAAAAGAAACAGAGGAGGGCTCAAGTTCTGTTAAAAACAGAGTATGGA
GAGGTTTTCTTGGGTGACAAGAAACGTATTTGTTATATAATTATGAACTAATCATATGTCTGAA
TATATAATGGAGATTGAATTTAATATATGGAAAGTTTAATGAACCGTCACAGTATATATAAACA
AGTTCAATAGGTTAATGTCCAATATAGAGATTAGTCTCTATAGAAGAAATTTTGGCCTTCTTTT
AAGGATGATTAAAGTAAAGTACCTTTGAAGAAGTGATTCAAGCATTTGATGATGAGAAGCGGTG
AGAAGTTCAGGATCATCGTGTTCCCTTTGGCCAAGATACACTATATAAACCTTATAAATCCGCC
AAAAAACCACCGAAAAAGTTAGAAATATCAGTAAATTCTTAGCGATTTTTCGCAAAATAGAACA
CCGTTTTAATTTAGTTACATTTACATACCTTGCTGTTACTATCTGAGGCTCCTTCAGCTGTAAG
AAAACTCAGCTCTGTGTTCAGAAATAGGACCAAAGCAATTGCCAATAGAAACACAAGTTTGGAA
CTTAGGAAAGAGTTCTCCATTTTATGCAGTGAGAAGTGTGTGTGATTCTGTCGAAGAGAAGCTT
TATTATATACATAGTGTGTCTTTAGGGAGTGAACTATTGCGTAAGATTCGAATTCAATTATTGG
TTTATTCGGCTCAATATCGGTATGGTAATTCTGAATCATACCGGTTTTATCTCTTGTGTAACGT
TATTTCCCGCCATGGATCTCAAGAGGGCTCAGTTTTAACTCTTACAATTGTCGTCTTTCTTATT
ATTGATGTCTTTCTTATTATAGATATACTAATAGTGTACCTACTTTAATTTCAGCTGAGTATAA
GAGGATATCAATCATTTCTAACTAATAGAGTAGATTAGGTATCTGTATAAGTTGGTAGATCATG
ATTGTCTGAATTACTCATTTTAGTAAAACAGATTATATTCTGAACTTTAATATATATAGGATCA
CAGGAGAGCAAACCAGTTCCATTTTTTGCATTTATGTGTACACTAAAATATCACATCTTTATAA
TATATAGTCAATATGATGATTATATATTTGTATGTAATGTTACAGCTATAGGTTATGATCATGA
TCTTTTATAAGAGATTCTAAGGTATTTGTGATTTGATCTTTTATTATGATGATCTTGAATCTTG
ATTTGACATTTTAGACTTAGATTTGCAACAAATTACATAAGAACAAACACAATGAGCATCATAT
GGCTCTTTTTATTACATCGAAATCGTTGTCTTAACAGAGACAGGGATTATAACATCATGAACAC
CATCACTCCATGTTAAGCTTCCAAAGAAGTAGCCAGTGTTGACTTTGTGACTTGTTTTAGCCTT
AACCGAGAAAGTGAGTACTCTCTTAGCTGCAGACTTAAACACGAGTGTGGTTGGGTTCACGGTG
AGAGTTATACCGAGAGGAGACTCGATCACAGCTCTATAGACTGACTTGATGGGTCCAACATTGG
TTACAGTTCTTGTGAGTGTGACTTCTTTCTCAAGATTTGGAATTGTGATTGAAGGTAAGTTGAT
ATCAAGCATTGATGGCTTAGGAATTGGGCAATTAGTCTTTTTACCGAGCACACGAGAGATTGAA
GAGTCGTTGTAACCCGCAGAACACATATACTTGATGTAATCCACAATCCCCATATCGTAGACAA
GTCCTGGTTTAGCAGCTTTTTCAGGGTTTACAAGTCCTCCTCCATAGTCAAATGGATCTGCAAG
CTTCTTGTTTGATCCTTCAGCAAAGATTGGTTCTCCAGATGGACTTGTCCTCCAAG
Conservation Information
Conserved circRNAs NA
PMCS 0.569925939
Functional Information
Coding potential NA
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Philips et al., 2020