Detail information of 4_circ_ag.4


General Information
CircRNA Name 4_circ_ag.4
ID in PlantcircBase ath_circ_032019
Alias NA
Organism Arabidpsis thaliana
Position chr4: 11493153-11497655  JBrowse»
Reference genome TAIR10.38
Type   ag-circRNA
Identification method find_circ
Parent gene NA
Parent gene annotation NA
Parent gene strand NA
Alternative splicing 4_circ_ag.2 4_circ_ag.3 4_circ_ag.5 4_circ_ag.6 4_circ_ag.7 4_circ_ag.8 4_circ_ag.9 4_circ_ag.10 AT4G21650_circ_g.1 AT4G21650_circ_g.2 AT4G21650_circ_g.3
Support reads 3
Tissues inflorescences
Exon boundary   Yes-Yes
Splicing signals   CT-AC
Number of exons covered NA
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   ACATCGATGTCCCTGAATGAAGTTTAAATCCGTTGAACGCACCAGGATCAAGCGGACTCACTGC
CGCGAGTATGCTAACACCCGGTGCTGCTATATCAGGcttgagaatggctggtgaaacagaatta
ggccctctagatgagaattcagcaaccttagtcattgcaggctgaccgtttagggtcgtagcag
cactaatt
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CTTGAGAATGGCTGGTGAAACAGAATTAGGCCCTCTAGATGAGAATTCAGCAACCTTAGTCATT
GCAGGCTGACCGTTTAGGGTCGTAGCAGCACTAATTCTCACAGTGGGAGATCTGTAGGTTTGAC
GGATCAATAATGTATATATTTAAGAAATGTAAATGGACTTATGTAACAGAGTGTTTTGGCATCA
AGATAGAGAGACCTGGTAGTACGTATGTATTGTAAAATGTGAGTTCCAATCTCATAATCTGTGA
AAATGTACGGTATAGAGTTGTATCGAGCAAGAAGATCATCAGGCTTTTTGGCTAAGATGACTGC
TACTACACCTCTCCCTGCAATTGAAGAAGGATGAGTACTATCGAATTCAAGAATTGTTTTCCCC
TTCACATCAACATTATGATCTGAATCCAAGAATGCTAAACTGGTTGAAATCTCCGGTCCAGTGA
ACAGAGATTCAGCCTAATTAGATACCAAAAAAAAACAACAAGTTAAAAAAATAACTCCAAACGT
TCAACTATTTAACTAATTTGAGTTTTTTGGGTGTAAAACGTACGAAGAGGGTTTGGTTATTCCC
AAGTGTGATCTTTGTAGGAAAAGACCGGTCAAGAGTAGTAGCAGCAACAGTCAAGAGCCAAGGA
GCAGCATTGGTAATATTCTGAGCACCAGGCCCATCATTACCCCCCGCAGCCACAACTGTAATCC
CTTTGGCCACCGCATGAAAAGCCGCGATAAAGTCGACCGAATCGACCTCGGAATTCTCGGGAAT
TCCCGCCCCAATAGAAACCGACAAAACATCTACTTGATCATGTATAGCATCATCAAAAGCCTTC
CACATATCAGCAACTGTGCATATACCATCGTATCCCACTACATTCCAACATACCTTGTATGAGG
CTATTCGGGCCCGAGGGGCTCCACCTCGGACCGTACCTGACAAGATCCCACATCCGTTACGAAT
ATTTTCTTATAAAACCGGTACCTTGACTCTTAAGTTAACTTTTTTAGTGAATGAAATCCAAAAG
TTTTTGCTATATCAGTACCTCGGGCTAGGCCATAGAAGCTCACGTTGGGAACGAATGAGCCACC
GGCTATTGTGGCTGTATGCGTGCCGTGACCAATTGCATCTCTGTTGGATTTGAAATCTTGGATG
ATTGTTCTGTTGAATTTCCCTCCAGTCTCGGCGAGTAGACCGCTTAGATAGTACTTTGCTCCTA
TTAGCTTGTTGTTGCAATGTATTTTGGCGTTAAACTGTTCTCCTGATTCACATTTTCCTCTCCA
ACGCTGAGGTATTGGTCCAAGACCATGATCGTTGAAGACCTTTGACTCCGGCCATATTCCTGCA
TAGATATACATACATACATGATGTGAATCAAGGAGAAAGATAGAGATAGAGTTATATTTAGAGA
GCGAGAGAAAGACCGGTATCAACGACGCCGATGATAGCTTCACTGCCCATGTTGGTTTCATGAA
GTAGACCTTTTGCAGATGATGATGAAGAAAAAGAAGTTGGATTTGGAGAGAGGCCAAGATGATC
CCAAGTTCTTGTGGTTTTCAGTTTCAGAATCCGGTTCGGGATAACATGGATTACTTCTGGATGC
TCTGTGTTTATGTACAAAAATCTTCAATGCTCAAAGATATGAAACTTTCTTAAATGTGAGTTTG
AGTTTTGTTGAGTACCTGAGATTTTCTTTGCTTGTGAAGATGTAAGAAGCGCCGCGAAACCAGA
GAATCCATATTGGTAGCTGTAGATCAGCGAGTTATGTGCGTCGTCTTTGCTGTATATATCATTA
GAGACACAAGTAAGAGAAGTGCTCCTAACAAAACAAAAGATAAAAACAGAGGAAGGTCCAAGTT
CCGTGAAGAAACAGAGTATGGCGACGGCAGTTTTCTTGGCACCCAAGAAAACGTATGTAATATA
TTATTATCAATTCTAGCAGATGTCTTGAATACATAATGGAGATAAATTATATATATGAAAAGTT
TAATAGGTTAATGTTTAATATAGAGATTTTATCTTGGAAGATGATTAAAGTAAAGTACCTTTGA
AGAAGTGATTCAAGCATTTGATGATGAGAAGCTGTGAAAAGTTCTGGATCATCGTGTTCCCTTT
CCCCAAGATACACTATATAAACCTAATAAATTGGCCAAAAAAAACACCGGAAAAGTTTAGAAAT
ATCAGTAAACTCTTAGCGATTTTCGCAAATAGATACCTTCTTTTCTCTAATTACATACTTTGCT
GTCACTGTCTGAGGCTCCTTCAGCTGCAAGAAAACTCACCCCTGTCTTAGGAAATAGGACCAAA
GCAATCGACAATAGAAACACAAGTGTGGATAAACAGTTCTCCATTGTCTGAAGTGAGAAGTGTG
TGCATGTGTGACTGTGTGGTATAGAAGCTTTTTTATATACATATAAATAGTAAATAATTCGTCT
TAAGCAATAAAATTTGGGGTTAGATTCGAATTTGGTTCGGATTCAATTATTGGTTTATTCAACT
TATTATGGTAATTCCGAATCAGACCGGTTTTATCTCTCGTGTAGCGTTACTGATATTCCCACCA
TAACTTTTTGGCTCAGTTTTAACTCTTACAATTGTCGTCTTTCTTATTATAGATATACGAATAG
TGTACCTAATTATATATATTACCTAATTATAATTCAAATGAGTATAAGACTATAAGAGGATATC
AATAATTTCTAACTAAATGAGTAGGTTAGGTAACTGTAATTAAGAAGTTGGTAGATCATGATTG
ACTGAATTACTCAATTTAGTATAGAATGATTATATTCTGAACTTTTGAAATATAGAAGACTCTA
CACCGAAATATAGGATCACAGGACAGCAAACCAATTCCGGATTTTTTTTTAATGTGTATATCGT
TTTGAATTTGTTTTTTTTACACACTTTATACTTTATAGATTATAAAATGGTGACCACGGATAGT
TGAATCTCTTTGATAGATAGTGGAATATTCCAAAGGTAGTACGATGAAACTAATTATATGGCAA
TCAAAGAATCGTAATGTGTGCAATCTTTGCTTAATATATAACTAACTATTTAACAAAATACAGA
ATCAAAAATTATATGATAAATCAAACAATCGTAATGTATATGTGCAAATTTTGCTTAAAACAGA
ATTACGTTTTCACGTACATTACATGATTCGCCACATTATGTTAATTTGGCTATAAATTAGTTAT
TAAAGTATATAGACTCAACATGAAAAAACTCGGTCAAGGGAGATTAAAATGGCAAACATTAATC
ATTGTTAAGCCTTTTAAGACTTTCACTATGGATTGTAAGAAGGAGTGTATTGCTTATTGTTAAG
ATATAATTAAGATCACATCTTGATTCTTGATCTTAATAATATATAGTCATTATGATGATTATAT
ATTTGCTATGTTATGTTATAGCTATAGATTATGAGATCATGAGGATCCTTTTGTCTCGATTCGG
TTTTAGTAGTTTTTATTATATGGATAATATATGGTTGTGATGAATAGATGAGGAAAGATTACTG
TTATCTCTATTTGTATGTTTGTGTAAGAGATTCTAAGTTTGTGATTTGATATTTTATTATGATG
ATGATCTTGAATCTTGATTTGACACTTTGAACTTAGAGTTGCAAGAGTAGTTACATAAGAACAA
ACACAATGAGCATCATATATATGGCTCTTTTTATTACATCGAAATCGTTGTCTTCACTGAGACA
GGGATTGTAACATCATGAACACCATCAGTCCATGTTAAGCTTCCAAAGAAGTAGCCACTGTTGA
CTTTATGACTCGTTTTAGCCTTAACCGAGAAAGTGAGTACTCTCTTTGCTGCAGACTTAAACAC
GAGTATGGTCGGGTTCACGGTGAGAGTTATACCCAGAGGAGACTCGATCACGGCTCTATAGACT
GACTTGATGGGTCCAACATTGGTTACAGTTCTTGTGAGTGTGACTTCTTTCTCAAGATTTGGAA
TTGTGATTGAAGGTAAGTTGATATCAAGCATTGATGGCTTAGGAATTGGGCATTTAGTCTTTTT
ACCGAGCACACGAGAGATTGAGGAGTCGTTGTAACCCGCAGAACACATATAATTGATGTAATCT
TTGATCCCCATATCGTAGACAAGTCCTGGTTTAGCAGCTTTTTCAGGGTTTACAAGTCCTCCTC
CATAGTCAAATGGATCTGCAAGCTTCTTGTTTGATCCTTGAGCAAAAATGGGTTCTCCAGATGG
ACTTGTTCTCCAAGCTACAAAAGAAACAGATCGATTGGTTCGTGATGGTTTGTTTATGAAAAAG
AAGAATAAGAAGAAGCAAGAACCTGTTGTGACCAAAGCTGATCTCATTGCAGCAGGAGACCACT
TAGGGTGTAGAGATTTTAGGAGAACTATGATTCCAGAAACAACAGGAGTCGACATCGATGTCCC
TGAATGAAGTTTAAATCCGTTGAACGCACCAGGATCAAGCGGACTCACTGCCGCGAGTATGCTA
ACACCCGGTGCTGCTATATCAGG
Conservation Information
Conserved circRNAs NA
PMCS 0.267365072
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017