Detail information of Zm00001d044099_circ_g.11


General Information
CircRNA Name Zm00001d044099_circ_g.11
ID in PlantcircBase zma_circ_001546
Alias circ1802, control_test_circ_004998
Organism Zea mays
Position chr3: 219076371-219078913  JBrowse»
Reference genome AGPv4.38
Type   ei-circRNA
Identification method CIRCexplor2, find_circ
Parent gene Zm00001d044099
Parent gene annotation carbonic anhydrase1
Parent gene strand -
Alternative splicing Zm00001d044095_circ_ag.1 Zm00001d044095_circ_ag.2 Zm00001d044095_circ_ag.3 Zm00001d044095_circ_ag.4 Zm00001d044096_circ_g.1 Zm00001d044096_circ_ag.1 Zm00001d044096_circ_ag.2 Zm00001d044096_circ_ag.3 Zm00001d044096_circ_ag.4 Zm00001d044099_circ_g.1 Zm00001d044099_circ_g.2 Zm00001d044099_circ_g.3 Zm00001d044099_circ_g.4 Zm00001d044099_circ_g.5 Zm00001d044099_circ_g.6 Zm00001d044099_circ_g.7 Zm00001d044099_circ_g.8 Zm00001d044099_circ_g.9 Zm00001d044099_circ_g.10 Zm00001d044099_circ_g.12 Zm00001d044099_circ_g.13 Zm00001d044099_circ_g.14 Zm00001d044099_circ_g.15 Zm00001d044099_circ_g.16 Zm00001d044099_circ_g.17 Zm00001d044099_circ_g.18 Zm00001d044099_circ_g.19 Zm00001d044099_circ_g.20 Zm00001d044099_circ_g.21 Zm00001d044099_circ_g.22 Zm00001d044099_circ_g.23 Zm00001d044099_circ_g.24 Zm00001d044099_circ_g.25 Zm00001d044099_circ_g.26 Zm00001d044099_circ_g.27 Zm00001d044099_circ_g.28 Zm00001d044099_circ_g.29
Support reads 6
Tissues seedling leaves, seedling
Exon boundary   No-Yes
Splicing signals   CT-TA
Number of exons covered Zm00001d044099_T004:6
Zm00001d044099_T002:6
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TGATGCCACCGCAGCAGCTGTGGCCAATGACCACGATGACCTGCACCTTGAGCGCGCACACGGC
GTACTCGATGGCGGACCCGGTGCCGGCGTACTTGATccttgtcgtagcctgggaccatggcggc
tatgttgcgaacggtgaaggcctcgccgggctgcaggcccagggtcaccgatgggcacacacgg
gagtcgga
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CCTTGTCGTAGCCTGGGACCATGGCGGCTATGTTGCGAACGGTGAAGGCCTCGCCGGGCTGCAG
GCCCAGGGTCACCGATGGGCACACACGGGAGTCGGAGCAAGCGAACACCATGTACTGCATGCAG
CATAGCAAAATCACTGTCATGTCAGGTCAGGCAAAAAGAAGGAGCACAAAAAATCAGGCCGGTT
CCCGCGGTTGTTAGCTATGCAGCGACAATGCCATCCCCACAGGTCATCCAATTAGTATATATAT
ATATCATGGCTGAGCTCCTTGATCTATATGGCGCCGATACGTGTTATGTCGGTAGCGTAGACTA
CGCCGATATACTAGGTCTAATGTCGACTTTCACAAGGATACATATAATTTTTTTTTTCAAAAGA
AGTTTTAAAATATGGTAATTTTTATGGATAACAAAACTAGTAGAACCCGCTAAAAGCATGAACG
CATGCATGAAATAATCATGCGCATGGGATAGATGCCAACTCAGAACACCCATAAAGAAAAACAA
TAAACTCTGTACTTGGTTACTTGCAATATTCTGGCACGCCAGGTTCTATATACTAGGAAGTGAG
CCTATATAGGGACGGCGGCATCTCAATAATTTACCAAGCAAATGCAAGTCTCGCCAGCTTAGCA
TATATGGCAGCACATGGGTTAGCAATTAGCACGCGCGCGGGGCGCATGCATTTGGTTCAGAAGA
ATAAGAATGGAGTATAGGCTAGTAGGCAATAGCGCATACCTTGGGGGCCTGGCCGGACTTGAGA
GGCCCGAAAAGCTCCGGCTTCTTGCTGTGAAATGAAGAAAAAAAAATCAAACGTACTAGCACAG
GAATAATATAGGATCAGTCGAAGCTATATCAGAATTCCCGATACAAATGAAACGTTTGAAACTG
AAACGGCTAAACCAAACGCCGGTGCTGCAGAAAACAACAGCCAGCTCTGAGTAGTAGAGGGGTG
ACTTACTCATAGACATTGACCTTGAACTGCTGGAACCCGCTCGTCAAGCGCTCGATGGCGTCCT
GGGGCTGCAGGACCAGCAACAAGAAAATCGTCGGTCAGTTCGCCATGCCCGGAAAGACTAACTT
GCATGCTCGTGATGGTACGGTGATAGATGCAGCATGAGGGGGGTATAGAGAGAGCGAGAGAATG
AAGGGGGCGTGATGCAACTTTTGGCCACACTGGACCGGGTGGGTGGGCTTCTGGTTCTCAAGGA
GTGACGAGGTGCGTGGGAATCTATGGGAGGGCAAAGGCGCTGCTCTGCTCTTTTCTTCGTCTCC
TGATATCCTCCCATGCATGTCAACAAGCTAAGGGGAGAGAAAGAAATTGCGATGGCAAACAAGG
GAGATAAATTAAAGGGGGCTGGCCGGATGATGTTGGGAATTGGGATCTGGAGTGCGCTAGCTAT
GTGCAAATGCAAGACGACGGACGTGATGTCGTCAATATAGCAATTGAAAAAAAAAGGTAAGAGC
AACTCCAAGAGCTTATGTAAAACAAATTGACTAGCTAAAAATAATAAAATTGGAGTAAAAATTG
GATCCAACAGTCTCTTCAAATCCTTCTCTCGCTATCCAACTCGGTAAACAACCCCCTCCGCTAG
CCAAATATGACTAATTCCCTACGCTAGCTATCCGGTCCTCCCATAGCCTTTGTCCTCAGCCGGA
GTGGAGGCAGGACGGTGTAGCATAGGCGCGTGGGACATAGGGAAGAAGGCAAGGTGAGAATGAC
ATGTGGGACCTACCAGTCTAATTTGGCTAGTCTGTTGGAATTAATCGTAATTTAGAGAGTGAAT
TATAGCTAAACGGCTAGCTAAATGAGAATATAGAATAAAAAATTTGGCTAATCTATTGGAGTTG
CTCTAAAAGAAGAGCTGTGCGCGTGGACCCCTACAGGCTCCCATGTGACGAACTGCCCTTTGAC
GAAGTCGTAGTGGGCGCCAACCAGCTTGAGCGTCCCGCCGGCCAGCCCTTCCTTGACGAAGGGG
TAGCTCTTGAGGTTCTGGAGCGACACGTTCACGGCCTCCTGCAGAAACACACACACACAATTAA
AGGTCGATGATGATCCTTGAATTTGTTCGTTGATGAGCGAAACCAATAATATATAATCCATTAT
TCATACGGTCGGTGTGTGTGCGTGCGTTTACGTTACGTACCTTCTCCAGGATGGAGCACTGGTC
ATCGAACGGCACCGATGCGTGCTCTTTCTTCACCTTGTTCTTGGCAGGGCTGCCGATCCTGACC
CAGTCCTCCACGAAGTGGCTGGATATACATGGCCAGATTTAAACCAACGACAGACAACACGCTG
AGCAGGTTACACTACACGGGGTTCTAATTTTTTTCTCTCTCTCTAAATAAAACTGCTATATATA
TTTTTTATACGCATTTTACGATGACTACTGCTTACAAGTTGTCGGGCGCGCCGTCCTTGAGGGA
GAGGAGCGCCCTGATGCCACCGCAGCAGCTGTGGCCAATGACCACGATGACCTGCACCTTGAGC
GCGCACACGGCGTACTCGATGGCGGACCCGGTGCCGGCGTACTTGAT
Conservation Information
Conserved circRNAs NA
PMCS 0.040730109
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chen et al., 2017b; Tang et al., 2018