Detail information of Zm00001d044099_circ_g.5


General Information
CircRNA Name Zm00001d044099_circ_g.5
ID in PlantcircBase zma_circ_001543
Alias circ1801, seedling_test_circ_000119
Organism Zea mays
Position chr3: 219075897-219078392  JBrowse»
Reference genome AGPv4.38
Type   ei-circRNA
Identification method CIRCexplor2, find_circ
Parent gene Zm00001d044099
Parent gene annotation carbonic anhydrase1
Parent gene strand -
Alternative splicing Zm00001d044095_circ_ag.1 Zm00001d044095_circ_ag.2 Zm00001d044095_circ_ag.3 Zm00001d044095_circ_ag.4 Zm00001d044096_circ_g.1 Zm00001d044096_circ_ag.1 Zm00001d044096_circ_ag.2 Zm00001d044096_circ_ag.3 Zm00001d044096_circ_ag.4 Zm00001d044099_circ_g.1 Zm00001d044099_circ_g.2 Zm00001d044099_circ_g.3 Zm00001d044099_circ_g.4 Zm00001d044099_circ_g.6 Zm00001d044099_circ_g.7 Zm00001d044099_circ_g.8 Zm00001d044099_circ_g.9 Zm00001d044099_circ_g.10 Zm00001d044099_circ_g.11 Zm00001d044099_circ_g.12 Zm00001d044099_circ_g.13 Zm00001d044099_circ_g.14 Zm00001d044099_circ_g.15 Zm00001d044099_circ_g.16 Zm00001d044099_circ_g.17 Zm00001d044099_circ_g.18 Zm00001d044099_circ_g.19 Zm00001d044099_circ_g.20 Zm00001d044099_circ_g.21 Zm00001d044099_circ_g.22 Zm00001d044099_circ_g.23 Zm00001d044099_circ_g.24 Zm00001d044099_circ_g.25 Zm00001d044099_circ_g.26 Zm00001d044099_circ_g.27 Zm00001d044099_circ_g.28 Zm00001d044099_circ_g.29
Support reads 9
Tissues seedling leaves, seedling
Exon boundary   No-Yes
Splicing signals   CT-TA
Number of exons covered Zm00001d044099_T003:2
Zm00001d044099_T001:2
Zm00001d044099_T004:6
Zm00001d044099_T002:6
Experimental Information
Sanger sequencing for BSS   Yes
PCR primers for BSS    F: GATCGGCTTCATTGCCAAGATG
R: CACGTTCACGGCCTCCTTCTC
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   AGTCGTAGTGGGCGCCAACCAGCTTGAGCGTCCCGCCGGCCAGCCCTTCCTTGACGAAGGGGTA
GCTCTTGAGGTTCTGGAGCGACACGTTCACGGCCTCccttctcgagaatggagcactggtcatc
gaacggcaccgaggcgtgctctttctttaccttcatcttggcaatgaagccgatcttaacccag
tcctcgac
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CCTTCTCGAGAATGGAGCACTGGTCATCGAACGGCACCGAGGCGTGCTCTTTCTTTACCTTCAT
CTTGGCAATGAAGCCGATCTTAACCCAGTCCTCGACGAAGTGGCTGCGTACGTACACCACACCA
AACCAACACACAACATGGTATAGAGAGGATCAAAATCATGCATGACATAAATAAGCGCAAATAG
TTTTTTATATCTAAATGAAACTTGTATATATTTTACTGTCGCGACTTACAAGGTGTCAGGTGCG
CCGTCCTGGAGGGAGAGGAGCGCCCTGATGCCACCGCAGCAGCTATGGCCAATGACCACGAGGA
CCTCCACCTTGAGAGCGCACACAGCGTACTCGATGGCGGACCCGATGCCGGTGTACTTGGTCTG
CAGTCGACACGAAAACGAGAGGCCGCGGCCGGCCGTGTGAGTAGAAATTGAGACCATTGCGTTG
TTCACAATCGTCAGTGTGTATATATACCTTGTCGTAGCCTGGGACCATGGCGGCTATGTTGCGA
ACGGTGAAGGCCTCGCCGGGCTGCAGGCCCAGGGTCACCGATGGGCACACACGGGAGTCGGAGC
AAGCGAACACCATGTACTGCATGCAGCATAGCAAAATCACTGTCATGTCAGGTCAGGCAAAAAG
AAGGAGCACAAAAAATCAGGCCGGTTCCCGCGGTTGTTAGCTATGCAGCGACAATGCCATCCCC
ACAGGTCATCCAATTAGTATATATATATATCATGGCTGAGCTCCTTGATCTATATGGCGCCGAT
ACGTGTTATGTCGGTAGCGTAGACTACGCCGATATACTAGGTCTAATGTCGACTTTCACAAGGA
TACATATAATTTTTTTTTTCAAAAGAAGTTTTAAAATATGGTAATTTTTATGGATAACAAAACT
AGTAGAACCCGCTAAAAGCATGAACGCATGCATGAAATAATCATGCGCATGGGATAGATGCCAA
CTCAGAACACCCATAAAGAAAAACAATAAACTCTGTACTTGGTTACTTGCAATATTCTGGCACG
CCAGGTTCTATATACTAGGAAGTGAGCCTATATAGGGACGGCGGCATCTCAATAATTTACCAAG
CAAATGCAAGTCTCGCCAGCTTAGCATATATGGCAGCACATGGGTTAGCAATTAGCACGCGCGC
GGGGCGCATGCATTTGGTTCAGAAGAATAAGAATGGAGTATAGGCTAGTAGGCAATAGCGCATA
CCTTGGGGGCCTGGCCGGACTTGAGAGGCCCGAAAAGCTCCGGCTTCTTGCTGTGAAATGAAGA
AAAAAAAATCAAACGTACTAGCACAGGAATAATATAGGATCAGTCGAAGCTATATCAGAATTCC
CGATACAAATGAAACGTTTGAAACTGAAACGGCTAAACCAAACGCCGGTGCTGCAGAAAACAAC
AGCCAGCTCTGAGTAGTAGAGGGGTGACTTACTCATAGACATTGACCTTGAACTGCTGGAACCC
GCTCGTCAAGCGCTCGATGGCGTCCTGGGGCTGCAGGACCAGCAACAAGAAAATCGTCGGTCAG
TTCGCCATGCCCGGAAAGACTAACTTGCATGCTCGTGATGGTACGGTGATAGATGCAGCATGAG
GGGGGTATAGAGAGAGCGAGAGAATGAAGGGGGCGTGATGCAACTTTTGGCCACACTGGACCGG
GTGGGTGGGCTTCTGGTTCTCAAGGAGTGACGAGGTGCGTGGGAATCTATGGGAGGGCAAAGGC
GCTGCTCTGCTCTTTTCTTCGTCTCCTGATATCCTCCCATGCATGTCAACAAGCTAAGGGGAGA
GAAAGAAATTGCGATGGCAAACAAGGGAGATAAATTAAAGGGGGCTGGCCGGATGATGTTGGGA
ATTGGGATCTGGAGTGCGCTAGCTATGTGCAAATGCAAGACGACGGACGTGATGTCGTCAATAT
AGCAATTGAAAAAAAAAGGTAAGAGCAACTCCAAGAGCTTATGTAAAACAAATTGACTAGCTAA
AAATAATAAAATTGGAGTAAAAATTGGATCCAACAGTCTCTTCAAATCCTTCTCTCGCTATCCA
ACTCGGTAAACAACCCCCTCCGCTAGCCAAATATGACTAATTCCCTACGCTAGCTATCCGGTCC
TCCCATAGCCTTTGTCCTCAGCCGGAGTGGAGGCAGGACGGTGTAGCATAGGCGCGTGGGACAT
AGGGAAGAAGGCAAGGTGAGAATGACATGTGGGACCTACCAGTCTAATTTGGCTAGTCTGTTGG
AATTAATCGTAATTTAGAGAGTGAATTATAGCTAAACGGCTAGCTAAATGAGAATATAGAATAA
AAAATTTGGCTAATCTATTGGAGTTGCTCTAAAAGAAGAGCTGTGCGCGTGGACCCCTACAGGC
TCCCATGTGACGAACTGCCCTTTGACGAAGTCGTAGTGGGCGCCAACCAGCTTGAGCGTCCCGC
CGGCCAGCCCTTCCTTGACGAAGGGGTAGCTCTTGAGGTTCTGGAGCGACACGTTCACGGCCTC
Conservation Information
Conserved circRNAs NA
PMCS 0.004273397
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chen et al., 2017b; Tang et al., 2018