Detail information of Zm00001d044099_circ_g.20


General Information
CircRNA Name Zm00001d044099_circ_g.20
ID in PlantcircBase zma_circ_001555
Alias circ1807
Organism Zea mays
Position chr3: 219078260-219080855  JBrowse»
Reference genome AGPv4.38
Type   ui-circRNA
Identification method CIRCexplor2
Parent gene Zm00001d044099
Parent gene annotation carbonic anhydrase1
Parent gene strand -
Alternative splicing Zm00001d044095_circ_ag.1 Zm00001d044095_circ_ag.2 Zm00001d044095_circ_ag.3 Zm00001d044095_circ_ag.4 Zm00001d044096_circ_g.1 Zm00001d044096_circ_ag.1 Zm00001d044096_circ_ag.2 Zm00001d044096_circ_ag.3 Zm00001d044096_circ_ag.4 Zm00001d044099_circ_g.1 Zm00001d044099_circ_g.2 Zm00001d044099_circ_g.3 Zm00001d044099_circ_g.4 Zm00001d044099_circ_g.5 Zm00001d044099_circ_g.6 Zm00001d044099_circ_g.7 Zm00001d044099_circ_g.8 Zm00001d044099_circ_g.9 Zm00001d044099_circ_g.10 Zm00001d044099_circ_g.11 Zm00001d044099_circ_g.12 Zm00001d044099_circ_g.13 Zm00001d044099_circ_g.14 Zm00001d044099_circ_g.15 Zm00001d044099_circ_g.16 Zm00001d044099_circ_g.17 Zm00001d044099_circ_g.18 Zm00001d044099_circ_g.19 Zm00001d044099_circ_g.21 Zm00001d044099_circ_g.22 Zm00001d044099_circ_g.23 Zm00001d044099_circ_g.24 Zm00001d044099_circ_g.25 Zm00001d044099_circ_g.26 Zm00001d044099_circ_g.27 Zm00001d044099_circ_g.28 Zm00001d044099_circ_g.29
Support reads 5
Tissues seedling leaves
Exon boundary   No-Yes
Splicing signals   CT-TA
Number of exons covered Zm00001d044099_T001:3
Zm00001d044099_T002:7
Zm00001d044099_T004:7
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   CTCTCTCCTCCCCTCTTATCGCCGGCGGCTGGTGGATGCCCTCCCTTTCTTTCTCTCGATCTCT
CTCGTTTGACTCCTCAGCTGCCCGCCGTCCCGTTTAcaggctcccatgtgacgaactgcccttt
gacgaagtcgtagtgggcgccaaccagcttgagcgtcccgccggccagcccttccttgacgaag
gggtagct
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CAGGCTCCCATGTGACGAACTGCCCTTTGACGAAGTCGTAGTGGGCGCCAACCAGCTTGAGCGT
CCCGCCGGCCAGCCCTTCCTTGACGAAGGGGTAGCTCTTGAGGTTCTGGAGCGACACGTTCACG
GCCTCCTGCAGAAACACACACACACAATTAAAGGTCGATGATGATCCTTGAATTTGTTCGTTGA
TGAGCGAAACCAATAATATATAATCCATTATTCATACGGTCGGTGTGTGTGCGTGCGTTTACGT
TACGTACCTTCTCCAGGATGGAGCACTGGTCATCGAACGGCACCGATGCGTGCTCTTTCTTCAC
CTTGTTCTTGGCAGGGCTGCCGATCCTGACCCAGTCCTCCACGAAGTGGCTGGATATACATGGC
CAGATTTAAACCAACGACAGACAACACGCTGAGCAGGTTACACTACACGGGGTTCTAATTTTTT
TCTCTCTCTCTAAATAAAACTGCTATATATATTTTTTATACGCATTTTACGATGACTACTGCTT
ACAAGTTGTCGGGCGCGCCGTCCTTGAGGGAGAGGAGCGCCCTGATGCCACCGCAGCAGCTGTG
GCCAATGACCACGATGACCTGCACCTTGAGCGCGCACACGGCGTACTCGATGGCGGACCCGGTG
CCGGCGTACTTGATCTGCAGTTTGGCCAAAACGGAAGACGACCGTGTGAGTAATATTAGTGTGG
CTGATACCACCGTTGCATGCGTCGATCGGTGTTTGCTCGTACGTACGTACCTTGTCGTAGGGTG
GGACCATGGAGGCGATGTTGCGGACGGTGAATGCCTCGCCGGGCTGCAGGCCCAGTGTCACCGA
CGGGCACACGCGGGAGTCGGAGCAGGCGAACACCATGTACTGCAGCGGAGGGGAAATCAGTCAC
CGTCAGGTCGGTGAAAAGAGGGAGGAGCACGTACGCAAAACCAAGTTCGATCGGTTTCCCATGG
CTCTTATCGATAAGCAGGTAAGCAGATCATCGGCCCTGGTCATCTCATCAGTGGAAGATTTCTG
GCGCCCCAAAAAGGCGGCAAGCTTTTGATTGAGTTTCGATTTGACCCTCCTCCTCTGGCTCTGT
AAGTACTAGTATTAGTTGCGACGAGGATGCTCTACGCGCGCTCTGGTTTCCGTGTGGCTCTCTA
GCACGCTGGTCTATCTTTATCCCATTATATTCCCTGCTGGCGGCCAATAGCAAGAACATTTCCG
TTCCGGGCATCATCAGGAGGCGTGATGCTGCTGCCATATCTTCCACAAAAATTGGGACATCTGT
AGTGTAGCATATTTCCTCGAGGACCGGCAACAGGCCCAACATTTATGCACCTAACTTTTTTGCA
AGGGGTGCGAGAGGGGAAGGGGACACGTCCAAGCCAACTACTCACGATGACGACAGGATCCCGT
GAGGTGGGGCGAGGGACAGTGCTGGACGCCTGGACCACACATTAGCCATGGAATGCTGATAATA
CACACCTAGTATTATCTGCATGGTTCCCCTTGCAGCTTTGGTCCAGGGGAGACAGGGTGGATGC
TGAATAGTGCAGGTGCGGCAGGGTGTTGCAGCAGCAATGGTGATGAGCTACAGAGCTAGTAATA
GGAACGAGCAACTAGTACTACTCAATCTTTTGGCCCAGTTGGCCGGAGTCGCTATAGACACACA
ACAAAATATATATAAAAAAACATTAGCAGCGCATACCCTGGGGCTCTGGCCGGACTTGAGAGGC
TCGAACAGCTCCGGCTTCTTGCTGCGAACAAAGATCAGCGGAGCACATGATCAGTCGGAGTCGG
AGCTCACTGAATTCACAAACAAACAAAAAAGGAAATAGAAACCAAACGCGGGTGCTGCAGAGAA
CAAACAGCTCAGGTGACTTACTCATAGACCTCGGTCTTGAACTTCTGGAACCCGCTCTTCAAGC
GCTCGACGGTGGGGTCCATGCCCTGCAATGTCAACAGCCAGATACATCGTCGGGTCATTCATGA
TCGTGCTGCAGCATGACGAGGTAGTAGAAAGAGGAGGGGCCATGGCCCATGATGCAATTTTGGC
CTACTTGCCGACGGACCACAACACAAGGAAAAAAATGCACAAAGGTGATCTAATTAGGGGGGGG
GGGGGGGGGGGGGAGCAGGGATCTTCTCTGCACCGGCCGGCACAGCGCTCGCTACACAGGGAGA
AAGCGGAAGCTGAATGCATGCAGTGTGGCTAGCTACTGATGGCAATGGAGGAAAAGAAAACGGT
GAGATTGCTGCGCGCGTGCTGCTGTGTGGAGGATGGTGCTGAAGGTGAGAGAGGAAGATGAGGA
GGAGGAGGAGGGGACGGACCTTGGAGGAAGCCTTGGAGGGAGGAGGTGGAGGTTGGGAGGGCTT
CTGGTTCTGAAGGAGTGACGAGGTGGGGGTATCTGTGGACGGCTTCTCCTTCGCTGGCCCCTCC
TTTTTTTTCGGAAGGCAGAGGCAGCTGCTCATTTTCTTCTTCTTCTCCTCCTCTTCTCTGGCCT
CTCTCTCCTCCCCTCTTATCGCCGGCGGCTGGTGGATGCCCTCCCTTTCTTTCTCTCGATCTCT
CTCGTTTGACTCCTCAGCTGCCCGCCGTCCCGTTTA
Conservation Information
Conserved circRNAs NA
PMCS 0.01020798
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chen et al., 2017b