Detailed infomation of each circRNA
General Information | |
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CircRNA Name | Zm00001d025124_circ_g.2 |
ID in PlantcircBase | zma_circ_010277 |
Alias | zma_circ_0000017 |
Organism | Zea mays |
Position | chr10: 105434697-105444067 JBrowse» |
Reference genome | AGPv4.38 |
Type | u-circRNA |
Identification method | find_circ |
Parent gene | Zm00001d025124 |
Parent gene annotation |
P-loop containing nucleoside triphosphate hydrolases superfamily protein |
Parent gene strand | + |
Alternative splicing | NA |
Support reads | NA |
Tissues | leaf, root |
Exon boundary | Yes-Yes |
Splicing signals | GT-AG |
Number of exons covered | Zm00001d025124_T001:6 |
Conservation Information | |
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Conserved circRNAs | osa_circ_023291* |
PMCS | 0.126357352 |
Functional Information | |
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Coding potential | Y |
Potential coding position |
105434708-105434740(+) 105443897-105434702(+) |
Potential amino acid sequence |
MYLRPPFASEEMKIDDWIKVRQCGIRYYLSLGDQRIVDKYFIIRPKAEFEVGRTTLGGLLALGY NVVVSFKRTCTSVNIDQLLIAAETIDTLNETFLVLKGPSRKIVAAEASKLGIKGPWITKSYLEM ILESKGVPRLNTPPPVSSKLLTESQEKKIAAPKPIRVSAENITNLDDLMQPWTRSPPKKLEQEH VLAKWQFISDSSSRSNIQLAPLPDSYDLDRGLLLSVQAIQALLENRGYPIIVGIALLRCTLGRL LLLKK*(+) MTWIGAFSYQFKQFRHCWRTEDTLSLLGLLY*(+) |
Sponge-miRNAs | NA |
circRNA-miRNA-mRNA network | VISUALIZATION |
Potential function description | NA |
Other Information | |
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References | Ma et al., 2021b |