Detail information of Os04g0252200_circ_g.13


General Information
CircRNA Name Os04g0252200_circ_g.13
ID in PlantcircBase osa_circ_023198
Alias NA
Organism Oryza sativa
Position chr4: 9906712-9911059  JBrowse»
Reference genome IRGSP-1.0.38
Type   u-circRNA
Identification method CIRCexplorer
Parent gene Os04g0252200
Parent gene annotation Similar to CPSF160; nucleic acid binding. (Os04t0252200-01);Simi
lar to CPSF160; nucleic acid binding. (Os04t0252200-02)
Parent gene strand -
Alternative splicing Os04g0252200_circ_g.1 Os04g0252200_circ_g.2 Os04g0252200_circ_g.3 Os04g0252200_circ_g.4 Os04g0252200_circ_g.5 Os04g0252200_circ_g.6 Os04g0252200_circ_g.7 Os04g0252200_circ_g.8 Os04g0252200_circ_g.9 Os04g0252200_circ_g.10 Os04g0252200_circ_g.11 Os04g0252200_circ_g.12 Os04g0252200_circ_g.14 Os04g0252200_circ_g.15 Os04g0252200_circ_g.16 Os04g0252200_circ_g.17 Os04g0252200_circ_g.18
Support reads 2
Tissues root
Exon boundary   Yes-Yes
Splicing signals   CT-AC
Number of exons covered Os04t0252200-01:3
Os04t0252200-02:4
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   GCAAAACAGATTTTGATGCACAGTAGGAAAATTGCACAAGAAGGCTATCCCCCAGACGACTACC
AAGGAAGAAGAATGAGTTTCCAATAGATGTCACAGCctcagtaattaaatcaggacggatagat
tgttgaaggacagaaagtgaaccatttttaccatgaccagaacagcacacctgaaataagctta
tattgttt
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CTCAGTAATTAAATCAGGACGGATAGATTGTTGAAGGACAGAAAGTGAACCATTTTTACCATGA
CCAGAACAGCACACCTGAAATAAGCTTATATTGTTTAGAAAAATGAGTAGCCCAAATCAAGGAT
AAATTACATACAGCAGTACTTAATTAAAGGAAAAAATGGTAATAATATGCCACAATCAAGGTTT
ACAGTTTAGAAATATGCCATTCGCATGCCTCATCCTTCCCTACTGCTGCACCTTACTCCCATGA
TCTCCACAGATCCAACAGATGCTATCTTGATGGTGCACTGCTGCTACCAATGGGTTCCAACATT
GCTGCGGAAAGCAATGAAAAGACAAATGATGGGGTGGTGCATTGTGGATTGCAACGTTCAGATG
TGAGAAGGCAGTGCCAATGCTCATCAATGTTTACAATGCTGACACTAGCACTGGTGAACCTTGC
GGAGGCTATGTCAATGTCAAGTGTGCTGTTGGGTTGCGCTAGTGCCTAGGAGGCCTGCGTTGGA
GAAACTAAGAAAAGTAGGTCAGTGGAAGGACAATGATGCTGGCTGGACCTGGTATCAAAAGAGA
TAACTCCACGGATTTTTCTAGAGCTTATCAGCAGCCAAGGACGCCATGACTGCTCGTTACTCAT
TCAGTTGGCACCCGCCTTCTCTGGAACACCACTAGTTGGTCAATGGCAGCCATGGAGTGGGTGG
AGATGGGAAAGGACGAAAGAATAATGGGGTTAAATCAGTCCATTTGCCTCCATATTGCAATGGC
ATATTCCCAATCCACAATTCTCAGCAACATTTTTGTAAACTGCATGCTTTGAAGTGGAATATAT
ATATACTATCCTTTATTAAATCAGGATAAATAGATTATTGCATTCCTTTAATTGTTGCACTGAA
TTGACAGATATGTGAAAGGTGATAAAAAAAGTAAAATGTTAAGATCGAATATCGTCAACATAAT
AATTAGCACATATTCATGCAGATTATTCAATAGCATACATTATGGACCATTGATGTTAACACCT
CAATTGATTACAGATGGCACATTGTTCCTAATTATGTTTATTCAGTCATGTACTATGTATAAAT
ATAAACTCATCAGAGTTCCAGTTAGCAATTTACCCATTCTGGTAAACATTCAGTTTATTGTCTT
AATCTTTTCATTATCTTGTATTTAATTCCTTGACTTGAGAACAACTAATCTTCAAAACCTAGCT
AGTACTAATATCAGAAACTTTTGGAATTTTCAACAACCAGCTGTAACCTGCTGCTTACAGGTAG
GATTTGAAACCTTGGTTTGCCATACTAAAGATAAAAAAAACAAACCACATATGCACATCCAACA
ATAGTAGCTAAATCAACCATAGAACTGATTGACAAAGACCCAACAGTAATAAAAGATCAAAAGT
AAAGATTGCCATGCCACTGACCAACTCGTAATTGCTTTGCTTCGCATTTCCCATTGCATTGGGA
TCTGCATTGGCTCTTAAACCATATGAAAAATCTTTCAGTGGACCAACATTGATCAATGCATCTC
TCACAATGTATGATATCTTCTGCAAAGAAAAAGCCAGTGAATTATATAGTCAGAATATAATGAG
AAGCAACTGTGATATTTTTTAAGAGAATAAGTAATATAGTTCGTGATTGGAAATGGTAGCCAAA
AAGAAATAGTAAACAACTATATACAAGATGAAGACCCTTTGTTAATTGAAAAAGATAATGGAAT
TGTGCATTGTACAGGAAGGATAAACGTCACTGTATAATCAATCCACATAACCAATAAATGAGTA
AGATTGTGCGCTTTTCTTCTTTTATCTCAACTTTCTTATATTAGCAAATATTGACTAACCAAGT
TTGAAGGATTATGTTTGGCACAACCTTTTCTCCGCTAGTAGGTCCCACATATCAAAATTGGGGA
CACTGGTGATGAGGTGGTGGCAGATTCACCACCACCACTTGCTCTTTTTAAAGGAGTACAGATA
ATTAGAACATATGATTCTGGAACCACAGGTAGCTAGCATACAGTTGAAACCCTGAAAGTAATAC
TCAGACCTGTGCTGATTCTAAACTGTTTGGTGCAATGATATTCTGAAAGGAAAGTTCCTCAACA
CTGGTCACATCTTGTAGAACATCAGAAGGAATCCTCTTTAGGCGCTTGGAGAAAGGCAGATCAC
CTTCAATATCAGCAGAGCGCTACAAAAGTAGATTGCTATATCATTAGTCACCAATGCTTTCAAG
GGACAGCCATAGCTCACCTTATACGTGGTATTTTTCAAAGGCTCAACGCTACATGCAACAAAAA
TAACCATCCATGTTATGTACATATTTTACTATTATTCTATAGCGATACTAGTATTAATTAAAAG
TATAATTTAATATTGTGTAGAAGTACATTTTATGGTTAATTAACTAAATGTATCTTTAGATGCT
TTAACAAAAATATACAATGGTGTGAGGTGTGTAGGGGGGAAGGGGGGCATCTCATAACAAATCT
TATGTGCCACTAATATACACACGGTGTCAGGTCAGCATAAAGACGTAATGTTTCGAACCAGGGG
GTAAAGCAGATGTATTTGAGAGTTTAAGATCGTAAAATGTCTTAACTCGAAGGTTCAGGGTTGA
TTTCTGGACTTCTGTCAAAAGTCTAGCCTTGAAAATGAACCTTATATTCATTGAATGCCCTAAA
TGATGATACCATCGAACAAGCATAGAGAGGTGGTAGTAGCAGAGGAAGAGAAGAAAAGGCAGTG
GATGGAAGATGAATTTGCCAAGGCTTGTACTCCTTCCGTTCCCAATTGATCATCATATTACAGG
AGTGCACCCAAACCAATAAAAGCTAATAACTATCATGTACTACATTTAATCTAGTAACAAACTC
TGATGCATGCACCATCCCCACTATTTCCTAGCCAATAACAAACCAAGACATTGCATGTTGGTTG
TAAAGGGTTGTGTGCATGGACGCATGCATCAATGTACATTTACTCCTATGCACACATAACAAAT
AGACCTTGGAATAAATACTACTAATATGATGATCATTTGGGAATGGAGGAAATAACCTTTAATG
ATCTCTAACGAGTGGCCAGTTCTTTTTTTTTCTCAAATACGCAAGAGCTGTGTATCATTGCATA
AATAGAAGAAGAAAGGTGTCCAAACACGCAAAAAAAACAGAAAAAAGTACAAGAACTCACGCCA
CCACAAAAACAAGCCACCACAAGGCAGTAAAATGACCCTGGTTGCCAGTTCTCAAGTATCACGT
TGGTCTAAAAAATCCTAAAAACCAACCCAATAACCATTTCTACTGATCTGCCAACAGAAAAACT
ATATGGCAAGTTGAGAAACATAAGAGGCATAGTTGTTAAACCTGGACCGGCCATCAAACCAGTG
AGCCCATCAGTTCACAGTTCATTGGCAGGACCGTTGGTTAAATAACATTTTTTTACTTTTTGTT
GTTTTGGTTGACTCCAAGGAAAAAAATCGAGTGCTTCTCCTTGTGAAATCAACAATGTGGCTTG
CTCAGTTGGTTTACTAGGTACATGGGCAAGCCAGTGATCACGGGATCGATCCCTCCTCCCACGC
ATGGAGTTTGATTTTTCTTGAAAAAAGTATAGCCGGCCAGAGACTGCTCCAGGTTTTTAGCCAG
TTTTATACAAAACTGGGCAGTATAACCAGTTTCTACCGATTCATGTGCATCCCCAGTCTTTTAA
TCAAATCAGATCACACCTCAGTCCGGTCCGGTTTTAATAACTATGATAAGAGGCATTTGGAACA
TAAAATTGAGGTGCCAATAGAATGACTTGACAGTGAGTGCCATAGATGTGGCATCATCTGTTTG
ACAGGAGGATCAATAATGCAAGCTGCAAACAATGGTGTAAACAATCGGACACTAGCAGATGGAT
CACCGGGCACCGGCACAAAGTAGCAGCACCCATATGGTTATGCTGCCATGGTCATGCTTCAACA
CCATGAGAAGAATTAGAACTAATATTGCATTCAAGCTCAGTTCAAAAAAATCATTGCATTCAAG
CCCAATGGTGAATTATTGGGTTCAAATTTTCAAAACCACAAGTACAGAAATATTGCATCTCTAG
TTACATGTTTTCTATAATGACAGTAAAAAAGAACTCATTTCAGGTGTTGTTCCAAAAATATAGG
TATCCGACATGTAGTGAAATGTTTTACTTCAAAGATAAAAAGTAAATCAACACAGATATCTCAG
TACACACCTCATTTGTTAAATCTTGCAAAACAGATTTTGATGCACAGTAGGAAAATTGCACAAG
AAGGCTATCCCCCAGACGACTACCAAGGAAGAAGAATGAGTTTCCAATAGATGTCACAGC
Conservation Information
Conserved circRNAs NA
PMCS 0.096818004
Functional Information
Coding potential Y
Potential coding position 9908175-9908762(-)
Potential amino acid sequence MGNAKQSNYELVCCSGHGKNGSLSVLQQSIRPDLITEAVTSIGNSFFFLGSRLGDSLLVQFSYC
ASKSVLQDLTNERSADIEGDLPFSKRLKRIPSDVLQDVTSVEELSFQNIIAPNSLESAQV*(-)
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017