Detail information of Os04g0252200_circ_g.8


General Information
CircRNA Name Os04g0252200_circ_g.8
ID in PlantcircBase osa_circ_023193
Alias NA
Organism Oryza sativa
Position chr4: 9904250-9908906  JBrowse»
Reference genome IRGSP-1.0.38
Type   u-circRNA
Identification method CIRCexplorer
Parent gene Os04g0252200
Parent gene annotation Similar to CPSF160; nucleic acid binding. (Os04t0252200-01);Simi
lar to CPSF160; nucleic acid binding. (Os04t0252200-02)
Parent gene strand -
Alternative splicing Os04g0252200_circ_g.1 Os04g0252200_circ_g.2 Os04g0252200_circ_g.3 Os04g0252200_circ_g.4 Os04g0252200_circ_g.5 Os04g0252200_circ_g.6 Os04g0252200_circ_g.7 Os04g0252200_circ_g.9 Os04g0252200_circ_g.10 Os04g0252200_circ_g.11 Os04g0252200_circ_g.12 Os04g0252200_circ_g.13 Os04g0252200_circ_g.14 Os04g0252200_circ_g.15 Os04g0252200_circ_g.16 Os04g0252200_circ_g.17 Os04g0252200_circ_g.18
Support reads 1
Tissues shoot
Exon boundary   Yes-Yes
Splicing signals   CT-AC
Number of exons covered Os04t0252200-01:3
Os04t0252200-02:5
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   AGGAAAGTTCCTCAACACTGGTCACATCTTGTAGAACATCAGAAGGAATCCTCTTTAGGCGCTT
GGAGAAAGGCAGATCACCTTCAATATCAGCAGAGCGctcccaaacaagttgccagcagcaatgg
tgcttgcttgaacaaagtaatcaacagtttctgtaacctctcctaagtcatcacctgtctcaag
tacctttc
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CTCCCAAACAAGTTGCCAGCAGCAATGGTGCTTGCTTGAACAAAGTAATCAACAGTTTCTGTAA
CCTCTCCTAAGTCATCACCTGTCTCAAGTACCTTTCACAACACAATTATCAAATGGTTAGCCAT
CATTCCATCAAAAGTAAAGGGGAGGATCGATTCCAATCATAAGTTAAATAGCAAAACCATGTGT
CAGCTGAATAAAATATTCAGAACATTGAAAAACACACCACATGGCATGACATGGTTTAGGAACA
CTCGCACAAACAAATAAAAAGAAGTGAAAGAAACAACATACACATAATGCAGGTCAAACCAGTA
CAGATATTGCTTGGGACAGGGAATAAATAGGTTTGCTTTTAATACTGATATTCACATTGCATGC
AACCATTTTGGTGTAAAATTATTAAAAAAACCTTGCATACAGGTATACACCCATTTTCCGATCC
ATTTGGAAGGTAATGTTCACATGAAGCAACAATTGTGTTTCAAGAAGCTGAGAAATAAGTTTCC
TAGAAGAGACAACAAACCGGACCATAGTTAACCACTCAGCACTTAATCAACTATTCCTGTGTCA
TGATTTTGTTCCAAAACCAACTCCACATAAAGCGAAAACATATACAGTACAAATCTGAACCATT
ATTTTATGGGGGAATGTTGTGGGAAATATTAGCTGAAAAGCATCAATTTAGTAAAATCATGAGA
ACCACTCCACAAACTATGTAGGGGAGATAAACAGGCAAAAATAGTACCAAGAAAAAATATATTT
GGCCGTTCACTACTCTTTGCCTGATTATCCTCACTACTATTTGACATCACCTTCCCTACACCCC
AACCTATTTCTCATCTCTAGCAGCCAGTAGACAGACTGCCTGGCAATCCTTTTGATCCCTGCCC
ATAACAGTATCCTCAATTATTATAACAGTTGGGGCATTAGAAATTTCCAAAGTTTCTAAAATAA
CTCTGTGTGGAACACGTTAAGTCACATGTACTTCCAGAAAACTTGCAATCGTATGGAATGACAT
TTAGCCATTTAGGACATGAGATAGAAATAGGAGGCTGAAAGCATATATTTTGGTCCCATTTATC
CTTTTTATGTCCTCCCACATATAGCAATCTATACTCCTTATAAAAGGTAGTAGTGGTGATGTTC
TTCTGCCACCAACCCCACCACCAACTCCCAATTTTCTTTTAGAGGAAAAATGGCATGTGGGGCT
AGAGGACCCACATGTCAACCACTTCCACCAACTCTCTACTTTTTATAGGAAGGAAAAAGGATAG
TGTGGGACTAAAGGGTCCACATGTCAATAACAAATATATACAGCAATTAAGAGATGGTAATAAC
AGGTTAATGATAATTTCCTTTAATTAATTAAAATCCAGTTGCAACGCATGGGCAATATGCTAGT
ATTCATTAAATTGTTTAGGATTTCTTGGATCATCTTATTATTGTTTAATTGTCATATACCATAC
CTAAAAAGGAACCAATGCAGGTTTCCTGGGACAACATTATAAGCATATCAGTTCACCACAACCA
ATGAGAGTACGCATCACCATACCCATGGGAAGGAGCATACATCAAACAGTAAAACAAAAAAAAA
AAAGGTTTTACCATTGTCCGATTCTCCAGACTTATTATCAGATATGCATGATATTCATTATCTT
CTGCCATTTGTCCACGGTAACTCTTATAGTAAACTGTCCAAATACCTCTGCAACTTGGTAATTC
CACCTACAGAAGTTAAGAACAATGTAACTGAGTAAAAATAAAAGTATTCCACGAAGTACCTAAA
AGTAATGACAAAATAAATGCATACTTGGTGTTGACCAATAGATGCAAAAGATGGACTGCTTTGT
TGGAGATTTTCAAAAGGCATCAATGGCATTTTCAGTTTGGTTGAGCCATCAAGATATGATCCAG
TGACAACAACCTTCTATTTCATGTGTGGTTACTATTTTACATGGGCCATAAAGTTTACTTAATT
ATGAACAGCCCACGCAAAACTAGCACCATATAAACAAACAAAATGTAAAATACAACAGCAAATC
TTTCATATTAGACTCAGGATAACTGGTTTCACAGCAATATTGCTGACAACACGAGACTCAGCAT
ACAACAGCAAATCTTTCACAGCAAAAACCACCATGTGTTCCATACTAAATCATGTTTCACCACC
AGCATTAATATGTTAAGTGAAACATTTATTGCCCCAGCCTTACTAATATACTGAATGGCCCAAT
CTGATCCATCCCATGCTTAAAGTAGAAACGGTAATTATGACCCAAATGATCTGCATGCATCATG
GAACTAATGTGTGCTCATCAGCTATTGTAAAGCCAACAAAATCAAAGATCTCGGATGAACGAGC
AAGCTAATAATAAAACAAACTGATAAAGAATTTGCAACTTCCCAAAAAGATTGCAAGTACTCAA
AATACCAATGGTAAATGAAAAAATATTTACCTCAGTAATTAAATCAGGACGGATAGATTGTTGA
AGGACAGAAAGTGAACCATTTTTACCATGACCAGAACAGCACACCTGAAATAAGCTTATATTGT
TTAGAAAAATGAGTAGCCCAAATCAAGGATAAATTACATACAGCAGTACTTAATTAAAGGAAAA
AATGGTAATAATATGCCACAATCAAGGTTTACAGTTTAGAAATATGCCATTCGCATGCCTCATC
CTTCCCTACTGCTGCACCTTACTCCCATGATCTCCACAGATCCAACAGATGCTATCTTGATGGT
GCACTGCTGCTACCAATGGGTTCCAACATTGCTGCGGAAAGCAATGAAAAGACAAATGATGGGG
TGGTGCATTGTGGATTGCAACGTTCAGATGTGAGAAGGCAGTGCCAATGCTCATCAATGTTTAC
AATGCTGACACTAGCACTGGTGAACCTTGCGGAGGCTATGTCAATGTCAAGTGTGCTGTTGGGT
TGCGCTAGTGCCTAGGAGGCCTGCGTTGGAGAAACTAAGAAAAGTAGGTCAGTGGAAGGACAAT
GATGCTGGCTGGACCTGGTATCAAAAGAGATAACTCCACGGATTTTTCTAGAGCTTATCAGCAG
CCAAGGACGCCATGACTGCTCGTTACTCATTCAGTTGGCACCCGCCTTCTCTGGAACACCACTA
GTTGGTCAATGGCAGCCATGGAGTGGGTGGAGATGGGAAAGGACGAAAGAATAATGGGGTTAAA
TCAGTCCATTTGCCTCCATATTGCAATGGCATATTCCCAATCCACAATTCTCAGCAACATTTTT
GTAAACTGCATGCTTTGAAGTGGAATATATATATACTATCCTTTATTAAATCAGGATAAATAGA
TTATTGCATTCCTTTAATTGTTGCACTGAATTGACAGATATGTGAAAGGTGATAAAAAAAGTAA
AATGTTAAGATCGAATATCGTCAACATAATAATTAGCACATATTCATGCAGATTATTCAATAGC
ATACATTATGGACCATTGATGTTAACACCTCAATTGATTACAGATGGCACATTGTTCCTAATTA
TGTTTATTCAGTCATGTACTATGTATAAATATAAACTCATCAGAGTTCCAGTTAGCAATTTACC
CATTCTGGTAAACATTCAGTTTATTGTCTTAATCTTTTCATTATCTTGTATTTAATTCCTTGAC
TTGAGAACAACTAATCTTCAAAACCTAGCTAGTACTAATATCAGAAACTTTTGGAATTTTCAAC
AACCAGCTGTAACCTGCTGCTTACAGGTAGGATTTGAAACCTTGGTTTGCCATACTAAAGATAA
AAAAAACAAACCACATATGCACATCCAACAATAGTAGCTAAATCAACCATAGAACTGATTGACA
AAGACCCAACAGTAATAAAAGATCAAAAGTAAAGATTGCCATGCCACTGACCAACTCGTAATTG
CTTTGCTTCGCATTTCCCATTGCATTGGGATCTGCATTGGCTCTTAAACCATATGAAAAATCTT
TCAGTGGACCAACATTGATCAATGCATCTCTCACAATGTATGATATCTTCTGCAAAGAAAAAGC
CAGTGAATTATATAGTCAGAATATAATGAGAAGCAACTGTGATATTTTTTAAGAGAATAAGTAA
TATAGTTCGTGATTGGAAATGGTAGCCAAAAAGAAATAGTAAACAACTATATACAAGATGAAGA
CCCTTTGTTAATTGAAAAAGATAATGGAATTGTGCATTGTACAGGAAGGATAAACGTCACTGTA
TAATCAATCCACATAACCAATAAATGAGTAAGATTGTGCGCTTTTCTTCTTTTATCTCAACTTT
CTTATATTAGCAAATATTGACTAACCAAGTTTGAAGGATTATGTTTGGCACAACCTTTTCTCCG
CTAGTAGGTCCCACATATCAAAATTGGGGACACTGGTGATGAGGTGGTGGCAGATTCACCACCA
CCACTTGCTCTTTTTAAAGGAGTACAGATAATTAGAACATATGATTCTGGAACCACAGGTAGCT
AGCATACAGTTGAAACCCTGAAAGTAATACTCAGACCTGTGCTGATTCTAAACTGTTTGGTGCA
ATGATATTCTGAAAGGAAAGTTCCTCAACACTGGTCACATCTTGTAGAACATCAGAAGGAATCC
TCTTTAGGCGCTTGGAGAAAGGCAGATCACCTTCAATATCAGCAGAGCG
Conservation Information
Conserved circRNAs NA
PMCS 0.096506553
Functional Information
Coding potential Y
Potential coding position 9908175-9908863(-)
Potential amino acid sequence MGNAKQSNYELVCCSGHGKNGSLSVLQQSIRPDLITEVELPSCRGIWTVYYKSYRGQMAEDNEY
HAYLIISLENRTMVLETGDDLGEVTETVDYFVQASTIAAGNLFGSALLILKVICLSPSA*(-)
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017