Detailed infomation of each circRNA
General Information | |
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CircRNA Name | Os04g0252200_circ_g.5 |
ID in PlantcircBase | osa_circ_023190 |
Alias | NA |
Organism | Oryza sativa |
Position | chr4: 9901675-9904344 JBrowse» |
Reference genome | IRGSP-1.0.38 |
Type | u-circRNA |
Identification method | CIRCexplorer |
Parent gene | Os04g0252200 |
Parent gene annotation |
Similar to CPSF160; nucleic acid binding. (Os04t0252200-01);Simi lar to CPSF160; nucleic acid binding. (Os04t0252200-02) |
Parent gene strand | - |
Alternative splicing | Os04g0252200_circ_g.1 Os04g0252200_circ_g.2 Os04g0252200_circ_g.3 Os04g0252200_circ_g.4 Os04g0252200_circ_g.6 Os04g0252200_circ_g.7 Os04g0252200_circ_g.8 Os04g0252200_circ_g.9 Os04g0252200_circ_g.10 Os04g0252200_circ_g.11 Os04g0252200_circ_g.12 Os04g0252200_circ_g.13 Os04g0252200_circ_g.14 Os04g0252200_circ_g.15 Os04g0252200_circ_g.16 Os04g0252200_circ_g.17 Os04g0252200_circ_g.18 |
Support reads | 1 |
Tissues | root |
Exon boundary | Yes-Yes |
Splicing signals | CT-AC |
Number of exons covered | Os04t0252200-01:1 Os04t0252200-02:3 |
Conservation Information | |
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Conserved circRNAs | NA |
PMCS | 0.145631916 |
Functional Information | |
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Coding potential | Y |
Potential coding position |
9903128-9901677(-) 9901765-9904322(-) |
Potential amino acid sequence |
MTQELNFTTHASESSSSEALGVACASIADPYVLLKMVDGSVQLLIGDYCTCTLSVNAPSIFISS SERIAACTLYRDRGPEPWLTKTRSDAWLSTGIAEAIDGNGTSSHDQSDIYCIICYESGKLEIFE VPSFRCVFSVENFISGEALLVDKFSQLIYEDSTKERYDCTKASLKKEAGDSIRIVELAMHRWSG QFSRPFLFGLLNDGTLLCYHAFSYEASESNVKRVPLSPQGSADHHNASDSRLRNLRFHRVSIDI TSREDIPTLGRPRITTFNNVGGYEGLFLSGTRPAWVMVCRQRLRVHPQVLETGDDLGEVTETVD YFVQASTIAAGNLFGRRRVIQVYGKGARVLDGSFMTQELNFTTHASESSSSEALGVACASIADP YVLLKMVDGSVQLLIGDYCTCTLSVNAPSIFISSSERIAACTLYRDRGPEPWLTKTRSDAWLST GIAEAIDGNGTSSHDQSDIYCIICYESGKLEIFEVPSFRCVFSVENFISGEALLVDKFSQLIYE DSTKERYDCTKASLKKEAGDSIRIVELAMHRWSGQFSRPFLFGLLNDGTLLCYHAFSYEASESN VKRVPLSPQGSADHHNASDSRLRNLRFHRVSIDITSREDIPTLGRPRITTFNNVGGYEGLFLSG TRPAWVMVCRQRLRVHPQVLETGDDLGEVTETVDYFVQASTIAAGNLFGRRRVIQVYGKGARVL DGSFMTQELNFTTHASESSSSEALGVACASIADPYVLLKMVDGSVQLLIGDYCTCTLSVNAPSI FISSSERIAACTLYRDRGPEPWLTKTRSDAWLSTGIAEAIDGNGTSSHDQSDIYCIICYESGKL EIFEVPSFRCVFSVENFISGEALLVDKFSQLIYEDSTKERYDCTKASLKKEAGDSIRIVELAMH RWSGQFSRPFLFGLLNDGTLLCYHAFSYEASESNVKRVPLSPQGSADHHNASDSRLRNLRFHRV SIDITSREDIPTLGRPRITTFNNVGGYEGLFLSGTRPAWVMVCRQRLRVHPQVLETGDDLGEVT ETVDYFVQASTIAAGNLFGRRRVIQVYGKGARVLDGSFMTQELNFTTHASESSSSEALGVACAS IADPYVLLKMVDGSVQLLIGDYCTCTLSVNAPSIFISSSERIAACTLYRDRGPEPWLTKTRSDA WLSTGIAEAIDGNGTSSHDQSDIYCIICYESGKLEIFEVPSFRCVFSVENFISGEALLVDKFSQ LIYEDSTKERYDCTKASLKKEAGDSIRIVELAMHRWSGQFSRPFLFGLLNDGTLLCYHAFSYEA SESNVKRVPLSPQGSADHHNASDSRLRNLRFHRVSIDITSREDIPTLGRPRITTFNNVGGYEGL FLSGTRPAWVMVCRQRLRVHPQ(-) MLVAMRDYFLVARGQLGLWFVDNDCGCTHRYLRQVMT*(-) |
Sponge-miRNAs | NA |
circRNA-miRNA-mRNA network | VISUALIZATION |
Potential function description | NA |
Other Information | |
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References | Chu et al., 2017 |