Detail information of Os04g0252200_circ_g.5


General Information
CircRNA Name Os04g0252200_circ_g.5
ID in PlantcircBase osa_circ_023190
Alias NA
Organism Oryza sativa
Position chr4: 9901675-9904344  JBrowse»
Reference genome IRGSP-1.0.38
Type   u-circRNA
Identification method CIRCexplorer
Parent gene Os04g0252200
Parent gene annotation Similar to CPSF160; nucleic acid binding. (Os04t0252200-01);Simi
lar to CPSF160; nucleic acid binding. (Os04t0252200-02)
Parent gene strand -
Alternative splicing Os04g0252200_circ_g.1 Os04g0252200_circ_g.2 Os04g0252200_circ_g.3 Os04g0252200_circ_g.4 Os04g0252200_circ_g.6 Os04g0252200_circ_g.7 Os04g0252200_circ_g.8 Os04g0252200_circ_g.9 Os04g0252200_circ_g.10 Os04g0252200_circ_g.11 Os04g0252200_circ_g.12 Os04g0252200_circ_g.13 Os04g0252200_circ_g.14 Os04g0252200_circ_g.15 Os04g0252200_circ_g.16 Os04g0252200_circ_g.17 Os04g0252200_circ_g.18
Support reads 1
Tissues root
Exon boundary   Yes-Yes
Splicing signals   CT-AC
Number of exons covered Os04t0252200-01:1
Os04t0252200-02:3
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TATACCTCCCAAACAAGTTGCCAGCAGCAATGGTGCTTGCTTGAACAAAGTAATCAACAGTTTC
TGTAACCTCTCCTAAGTCATCACCTGTCTCAAGTACctgtgggtgcacccgcaatcgttgtcga
caaaccataacccaagctggcctcgtgccactaagaaataatccctcatagccaccaacattgt
taaaggtt
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CTGTGGGTGCACCCGCAATCGTTGTCGACAAACCATAACCCAAGCTGGCCTCGTGCCACTAAGA
AATAATCCCTCATAGCCACCAACATTGTTAAAGGTTGTTATTCTTGGTCGTCCAAGAGTTGGTA
TGTCTTCTCGTGATGTTATATCTATAGAAACCCGGTGAAATCTGAGATTTCTGAGCCTGGAATC
ACTGGCATTGTGATGATCAGCAGAACCTTGAGGTGACAATGGAACCCTTTTCACATTGCTCTCC
GAGGCTTCATAAGAGAAGGCATGGTAACACAACAATGTGCCATCATTCAATAGTCCAAAAAGGA
AGGGTCTACTGAATTGACCAGACCATCTATGCATTGCAAGCTCAACTATCCGAATGCTATCTCC
TGCTTCTTTCTTTAGGGAAGCTTTAGTGCAATCATATCTTTCTTTCGTGCTATCCTCATATATG
AGCTGAGAAAATTTATCAACCAAAAGAGCCTCGCCAGAAATAAAATTTTCCACAGAGAAAACAC
ATCGGAAACTAGGCACTTCAAAAATTTCCAGTTTACCGCTTTCATAGCAAATGATACAATATAT
ATCAGATTGATCATGAGATGAAGTACCATTGCCATCAATTGCCTCCGCAATACCAGTAGATAAC
CATGCATCACTACGTGTCTTTGTCAGCCATGGTTCAGGACCTCTGTCACGATAAAGTGTACAGG
CAGCGATTCGCTCACTTGAGCTAATAAATATACTGGGAGCATTCACAGAAAGAGTACAAGTACA
ATAATCTGCACGACGAAACAAAAAAGACATGTATTTAATTATTTCAGTAATTGGTGATGTGCAA
TTAAGATGACATATACAACTCGTCTAGCTGGCCATATCAAATTTACTTCCAAAAGCCTTTCCTA
AACCTAATCCATCCAAATCTCACACAAGTTCATAGGCTAGAACTGAAATAAGAATCAGTCCCAA
TAGTTAAAACACAGTTCTATGCACCAGCTTAGTCCTAAACATACAAAGCACCAGATTGCTAACT
TCTATCTTCATCTATCAGGAAATCATCACATGTCTGTGTCCTCTAAAGCCATATGAAAGCAAAA
TAGGTATTGCACTTCACCATCATATGCTTATTTGATCTCTACTTCCTCAAAAGGATTCTTTTTT
TTTCTAGCATTACTTCCTCCAAACTACTTGACAATATGACAAATTGCATGCGATAAGTATATAC
TGGTGGACTAGAATTTTGAAGTTTGACCGAAGTTTGGACAAATAAAAAACAAATAACAACGAAA
GCAATTCGTGTTTGACTAATGGATATGCATTACCTCCTATAAGAAGTTGAACAGATCCATCAAC
CATCTTCAAAAGAACATATGGATCTGCAATGGAAGCGCATGCCACACCGAGAGCCTCTGAACTA
GATGATTCTGAAGCATGCGTAGTAAAGTTTAGCTCCTGTGTCATGAAAGAACCATCAAGCACAC
GAGCACCCTTACCATATACCTGTATGACACGCCGCCTGCAAAAAAAAACAGAAAAAAGACTCAA
CAATAATGAAATAATAGAAATTGCTAAATTTCCTGCATTATAACCTGAGTATCACATATCAGTT
ATATAGATACATAAGACAGTGATACACAATTTTCAAAATAAAAGGAGGGGCAAGATTTGAGTAC
ATATATGTTAAAATATAATTGCAGCATGATATATGTTATGCCGCATACAAGAAGGCGCAGAAGA
TCCATTATGCCATCATAAGAAAAGGAAAAGGTAAAGGAGGAAAGAGATAGGGCACTTTTGCCCA
TTGTATCGACCAACAGGCATGTTATGCCCTTGCAGCCCAATCAACCCACCAGCACAGCAATAGA
GGCTGCTTGACCTAACCCCTCTTTCATGTGCATGAAGCACCACGACCACCTCTCTTCTTCCTCT
TGATTTTCACTTTAGGATACTCATCAAACTCCAGCTTCAACTGTCCATCCAGTGTGACATCCCC
TCATTACTGCCCAGAATCAGCTTCATCCCCTGCTGTTCACAGGCATGACGCAAAGACATCGCGA
AAAGCAGCGAGGAGAGGATTCCCTTGCTATGGAAGAAGCAGGACAGGAATGTGTATTGAAAAAC
GTATCACACAATGTATTAGTGAATTACCACTAATTGTTCTCATTATTTTCGAAATTTAACCAAC
ACTTTGGCAATACACTGTATTGCTGGCTTGCTGCATCATTATGTATGTATCACATACAGGTAAG
GCAGTTGGCTGGCGTACCAGTGAACCTTTAGATTTTTAACATCTTCAAATCTTCATTCATGTTT
TATGAAAGCCGTCAGATGATGTGAAATGTAGGAAAACAAATTATGGAAGAGCACTAAACATACA
CATTCATTAGACGCACACATGAGAAGAGATAGTTGGAGTAATGTCATGACAAATTAGACATACC
CTGAAACCCAGGTTGCTCAATCCACATGAGATAGTTGTCATAACTATAAGACATATGCAAAATC
TATCTGTTCCACAGCAGATAATGCCAAACTACTATTTACATAATTGATATAAATTACAGAAATA
TTAGCAGTTGTATACCTCCCAAACAAGTTGCCAGCAGCAATGGTGCTTGCTTGAACAAAGTAAT
CAACAGTTTCTGTAACCTCTCCTAAGTCATCACCTGTCTCAAGTAC
Conservation Information
Conserved circRNAs NA
PMCS 0.145631916
Functional Information
Coding potential Y
Potential coding position 9903128-9901677(-)
9901765-9904322(-)
Potential amino acid sequence MTQELNFTTHASESSSSEALGVACASIADPYVLLKMVDGSVQLLIGDYCTCTLSVNAPSIFISS
SERIAACTLYRDRGPEPWLTKTRSDAWLSTGIAEAIDGNGTSSHDQSDIYCIICYESGKLEIFE
VPSFRCVFSVENFISGEALLVDKFSQLIYEDSTKERYDCTKASLKKEAGDSIRIVELAMHRWSG
QFSRPFLFGLLNDGTLLCYHAFSYEASESNVKRVPLSPQGSADHHNASDSRLRNLRFHRVSIDI
TSREDIPTLGRPRITTFNNVGGYEGLFLSGTRPAWVMVCRQRLRVHPQVLETGDDLGEVTETVD
YFVQASTIAAGNLFGRRRVIQVYGKGARVLDGSFMTQELNFTTHASESSSSEALGVACASIADP
YVLLKMVDGSVQLLIGDYCTCTLSVNAPSIFISSSERIAACTLYRDRGPEPWLTKTRSDAWLST
GIAEAIDGNGTSSHDQSDIYCIICYESGKLEIFEVPSFRCVFSVENFISGEALLVDKFSQLIYE
DSTKERYDCTKASLKKEAGDSIRIVELAMHRWSGQFSRPFLFGLLNDGTLLCYHAFSYEASESN
VKRVPLSPQGSADHHNASDSRLRNLRFHRVSIDITSREDIPTLGRPRITTFNNVGGYEGLFLSG
TRPAWVMVCRQRLRVHPQVLETGDDLGEVTETVDYFVQASTIAAGNLFGRRRVIQVYGKGARVL
DGSFMTQELNFTTHASESSSSEALGVACASIADPYVLLKMVDGSVQLLIGDYCTCTLSVNAPSI
FISSSERIAACTLYRDRGPEPWLTKTRSDAWLSTGIAEAIDGNGTSSHDQSDIYCIICYESGKL
EIFEVPSFRCVFSVENFISGEALLVDKFSQLIYEDSTKERYDCTKASLKKEAGDSIRIVELAMH
RWSGQFSRPFLFGLLNDGTLLCYHAFSYEASESNVKRVPLSPQGSADHHNASDSRLRNLRFHRV
SIDITSREDIPTLGRPRITTFNNVGGYEGLFLSGTRPAWVMVCRQRLRVHPQVLETGDDLGEVT
ETVDYFVQASTIAAGNLFGRRRVIQVYGKGARVLDGSFMTQELNFTTHASESSSSEALGVACAS
IADPYVLLKMVDGSVQLLIGDYCTCTLSVNAPSIFISSSERIAACTLYRDRGPEPWLTKTRSDA
WLSTGIAEAIDGNGTSSHDQSDIYCIICYESGKLEIFEVPSFRCVFSVENFISGEALLVDKFSQ
LIYEDSTKERYDCTKASLKKEAGDSIRIVELAMHRWSGQFSRPFLFGLLNDGTLLCYHAFSYEA
SESNVKRVPLSPQGSADHHNASDSRLRNLRFHRVSIDITSREDIPTLGRPRITTFNNVGGYEGL
FLSGTRPAWVMVCRQRLRVHPQ(-)
MLVAMRDYFLVARGQLGLWFVDNDCGCTHRYLRQVMT*(-)
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017