Detail information of Os03g0227700_circ_g.4


General Information
CircRNA Name Os03g0227700_circ_g.4
ID in PlantcircBase osa_circ_018642
Alias Os_ciR4777
Organism Oryza sativa
Position chr3: 6738313-6738531  JBrowse»
Reference genome IRGSP-1.0.38
Type   e-circRNA
Identification method find_circ
Parent gene Os03g0227700
Parent gene annotation Cytochrome P450 family protein. (Os03t0227700-01)
Parent gene strand +
Alternative splicing Os03g0227700_circ_g.3 Os03g0227700_circ_g.5 Os03g0227700_circ_g.6 Os03g0227700_circ_g.7 Os03g0227700_circ_g.8 Os03g0227700_circ_g.9 Os03g0227700_circ_g.10 Os03g0227700_circ_g.11
Support reads 4
Tissues root
Exon boundary   No-Yes
Splicing signals   GT-AG
Number of exons covered Os03t0227601-01:1
Os03t0227601-01:1
Os03t0227700-01:1
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   CCGCGCCGTCCTCCTCCCCGAGGTCGAGCGCCACACCCTCCTCGTCCTCCGCGCCTGGCCCCCT
TCCTCCACCTTCTCCGCTCAGCACCAAGCCAAGAAGtgcagctacccgcgcagcatcggcggca
tcctgggcaagtggtccatgctggtcctcgtcggggacccgcaccgcgagatgcgcgccatctc
cctcaact
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence TGCAGCTACCCGCGCAGCATCGGCGGCATCCTGGGCAAGTGGTCCATGCTGGTCCTCGTCGGGG
ACCCGCACCGCGAGATGCGCGCCATCTCCCTCAACTTCCTCTCCTCCGTCCGCCTCCGCGCCGT
CCTCCTCCCCGAGGTCGAGCGCCACACCCTCCTCGTCCTCCGCGCCTGGCCCCCTTCCTCCACC
TTCTCCGCTCAGCACCAAGCCAAGAAG
Conservation Information
Conserved circRNAs NA
PMCS 0.416506849
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Ye et al., 2015