Detail information of Os03g0227700_circ_g.7


General Information
CircRNA Name Os03g0227700_circ_g.7
ID in PlantcircBase osa_circ_018644
Alias Os_ciR1806
Organism Oryza sativa
Position chr3: 6741601-6742093  JBrowse»
Reference genome IRGSP-1.0.38
Type   e-circRNA
Identification method CIRCexplorer, find_circ
Parent gene Os03g0227700
Parent gene annotation Cytochrome P450 family protein. (Os03t0227700-01)
Parent gene strand +
Alternative splicing Os03g0227700_circ_g.3 Os03g0227700_circ_g.4 Os03g0227700_circ_g.5 Os03g0227700_circ_g.6 Os03g0227700_circ_g.8 Os03g0227700_circ_g.9 Os03g0227700_circ_g.10 Os03g0227700_circ_g.11
Support reads 7/3
Tissues root/shoot, root
Exon boundary   Yes-Yes
Splicing signals   GT-AG
Number of exons covered Os03t0227700-01:2
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   CATGCAGGAGGAGCATCTTGGGATTGCAAGGAGACAAAGGCTAAGAGGGGAGTGCAAATTGAGC
TGGGAAGACTACAAAGAGATGGTTTTCACGCAATGTtcgcgtgctgccattctcggagtaatag
agaggaaaatggaagagcgggttgagaagctgagcaaggaggatgcaagcgtagagcaagacga
tcttctcg
Assembled circRNA sequence   Yes
Full-length trsnacripts Transcript length: 345
Transcript exons: 6741601-6741852,6742001-6742093
TCGCGTGCTGCCATTCTCGGAGTAATAGAGAGGAAAATGGAAGAGCGGGTTGAGAAGCTGAGCA
AGGAGGATGCAAGCGTAGAGCAAGACGATCTTCTCGGATGGGCTCTGAAACAATCTAACCTTTC
AAAAGAGCAAATCCTGGACCTCTTGCTGAGCTTGCTCTTCGCCGGGCACGAGACGTCGTCCATG
GCGCTCGCCCTCGCCATCTTCTTCCTTGAAGGCTGCCCCAAGGCTGTCCAAGAACTGAGGGAGG
AGCATCTTGGGATTGCAAGGAGACAAAGGCTAAGAGGGGAGTGCAAATTGAGCTGGGAAGACTA
CAAAGAGATGGTTTTCACGCAATGT

Genomic sequence TCGCGTGCTGCCATTCTCGGAGTAATAGAGAGGAAAATGGAAGAGCGGGTTGAGAAGCTGAGCA
AGGAGGATGCAAGCGTAGAGCAAGACGATCTTCTCGGATGGGCTCTGAAACAATCTAACCTTTC
AAAAGAGCAAATCCTGGACCTCTTGCTGAGCTTGCTCTTCGCCGGGCACGAGACGTCGTCCATG
GCGCTCGCCCTCGCCATCTTCTTCCTTGAAGGCTGCCCCAAGGCTGTCCAAGAACTGAGGGTAC
AGAGAATTACAGATTCGAAATTAACATCTACTGTCACTAGCTCAGTGCTACGTTTAACTGTAGA
GCAACAATTGCAGAAAGCGAAGGCATCAGAAATGACATGGGAATCGATTAGTTACACTCACACT
GACGCGTGACATGCAGGAGGAGCATCTTGGGATTGCAAGGAGACAAAGGCTAAGAGGGGAGTGC
AAATTGAGCTGGGAAGACTACAAAGAGATGGTTTTCACGCAATGT
Conservation Information
Conserved circRNAs osi_circ_014085
PMCS 0.427910649
Functional Information
Coding potential Y
Potential coding position 6741638-6742090(+)
6741811-6742068(-)
Potential amino acid sequence MEERVEKLSKEDASVEQDDLLGWALKQSNLSKEQILDLLLSLLFAGHETSSMALALAIFFLEGC
PKAVQELREEHLGIARRQRLRGECKLSWEDYKEMVFTQCSRAAILGVIERKMEERVEKLSKEDA
SVEQDDLLGWALKQSNLSKEQILDLLLSLLFAGHETSSMALALAIFFLEGCPKAVQELREEHLG
IARRQRLRGECKLSWEDYKEMVFTQCSRAAILGVIERKMEERVEKLSKEDASVEQDDLLGWALK
QSNLSKEQILDLLLSLLFAGHETSSMALALAIFFLEGCPKAVQELREEHLGIARRQRLRGECKL
SWEDYKEMVFTQCSRAAILGVIERKMEERVEKLSKEDASVEQDDLLGWALKQSNLSKEQILDLL
LSLLFAGHETSSMALALAIFFLEGCPKAVQELREEHLGIARRQRLRGECKLSWEDYKEMVFTQC
(+)
MARASAMDDVSCPAKSKLSKRSRICSFERLDCFRAHPRRSSCSTLASSLLSFSTRSSIFLSITP
RMAAREHCVKTISL*(-)
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Ye et al., 2015;Chu et al., 2017