Detail information of Os03g0227700_circ_g.11


General Information
CircRNA Name Os03g0227700_circ_g.11
ID in PlantcircBase osa_circ_018648
Alias NA
Organism Oryza sativa
Position chr3: 6742886-6743168  JBrowse»
Reference genome IRGSP-1.0.38
Type   e-circRNA
Identification method CIRCexplorer
Parent gene Os03g0227700
Parent gene annotation Cytochrome P450 family protein. (Os03t0227700-01)
Parent gene strand +
Alternative splicing Os03g0227700_circ_g.3 Os03g0227700_circ_g.4 Os03g0227700_circ_g.5 Os03g0227700_circ_g.6 Os03g0227700_circ_g.7 Os03g0227700_circ_g.8 Os03g0227700_circ_g.9 Os03g0227700_circ_g.10
Support reads 2
Tissues root
Exon boundary   Yes-Yes
Splicing signals   GT-AG
Number of exons covered Os03t0227700-01:2
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   CATTCCAAGCGGATGGAAGATCCTGCCGGTGTTAGCCGCGGTGCATCTGGACTCGTCCCTGTAC
GAGGACCCCCAGCGCTTCAATCCCTGGAGATGGAAGgtcataaacgagacgttgcggctaggaa
acgtggtcaggttcctgcaccggaaggtcatcaaggacgtgcactacaagggtgagtagctcga
tttcactc
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence GTCATAAACGAGACGTTGCGGCTAGGAAACGTGGTCAGGTTCCTGCACCGGAAGGTCATCAAGG
ACGTGCACTACAAGGGTGAGTAGCTCGATTTCACTCTTCTTCCCTGAATCGACCTCTCCTCTAT
CTGACAGCAGAAGCTAACTGAACTGAACTGAACTGAACTGAACTGAAGGTTATGACATTCCAAG
CGGATGGAAGATCCTGCCGGTGTTAGCCGCGGTGCATCTGGACTCGTCCCTGTACGAGGACCCC
CAGCGCTTCAATCCCTGGAGATGGAAG
Conservation Information
Conserved circRNAs NA
PMCS 0.246030241
Functional Information
Coding potential Y
Potential coding position 6743082-6743065(+)
6742946-6743065(-)
Potential amino acid sequence MEDPAGVSRGASGLVPVRGPPALQSLEMEGHKRDVAARKRGQVPAPEGHQGRALQGL*(+)
MTFRCRNLTTFPSRNVSFMTFHLQGLKRWGSSYRDESRCTAANTGRIFHPLGMS*(-)
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017