Detail information of Os03g0227700_circ_g.10


General Information
CircRNA Name Os03g0227700_circ_g.10
ID in PlantcircBase osa_circ_018647
Alias NA
Organism Oryza sativa
Position chr3: 6742094-6742302  JBrowse»
Reference genome IRGSP-1.0.38
Type   i-circRNA
Identification method CIRCexplorer
Parent gene Os03g0227700
Parent gene annotation Cytochrome P450 family protein. (Os03t0227700-01)
Parent gene strand +
Alternative splicing Os03g0227700_circ_g.3 Os03g0227700_circ_g.4 Os03g0227700_circ_g.5 Os03g0227700_circ_g.6 Os03g0227700_circ_g.7 Os03g0227700_circ_g.8 Os03g0227700_circ_g.9 Os03g0227700_circ_g.11
Support reads 1
Tissues root
Exon boundary   No-No
Splicing signals   TC-GT
Number of exons covered 0
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   ACTTGCGTAGAGAGATAGCAACTTCCCGAAATGTCATGTACGAATGGAGACTGAAAGCTCTGCG
AAATAATTGCCGGGCCACGTACTACAGTACTTACGCgtaaggccccccctactttgttccttcc
gatccctcctccctaaacgctactaatataaatcggtgcaaaggctttgtgctagcgtagctct
tgctgttt
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence GTAAGGCCCCCCCTACTTTGTTCCTTCCGATCCCTCCTCCCTAAACGCTACTAATATAAATCGG
TGCAAAGGCTTTGTGCTAGCGTAGCTCTTGCTGTTTTGTTTGGTCACTTGCGTAGAGAGATAGC
AACTTCCCGAAATGTCATGTACGAATGGAGACTGAAAGCTCTGCGAAATAATTGCCGGGCCACG
TACTACAGTACTTACGC
Conservation Information
Conserved circRNAs NA
PMCS 0.083333333
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017