Plant Circular RNA Database

Detail information of Os06g0194900_circ_g.12

			
						 General Information
					
						CircRNA Name
						Os06g0194900_circ_g.12
					
						ID in PlantcircBase
						osa_circ_030044
					
						Alias
						NA
					
						Organism
						
							Oryza sativa						
					
						Position
						
							chr6: 4798323-4801273  JBrowse»						
					
						Reference genome
						
							IRGSP-1.0.38						
					
						Type  
						
							ue-circRNA							
									
						Identification method
						CIRCexplorer
					
						Parent gene
						
							Os06g0194900						
					
						Parent gene annotation
						
							Sucrose synthase 2 (EC 2.4.1.13). (Os06t0194900-01);Sucrose synt
hase 2 (EC 2.4.1.13). (Os06t0194900-02);Sucrose synthase 2 (EC 2
.4.1.13). (Os06t0194900-03);Similar to Sucrose synthase 2. (Os06
t0194900-04)
							
						Parent gene strand
						-
					
						Alternative splicing
						
							Os06g0194900_circ_g.13 Os06g0194900_circ_g.14 Os06g0194900_circ_g.15 Os06g0194900_circ_g.16 Os06g0194900_circ_g.17 Os06g0194900_circ_g.18 Os06g0194900_circ_g.19 Os06g0194900_circ_g.20 Os06g0194900_circ_g.21 Os06g0194900_circ_g.22 Os06g0194900_circ_g.23 Os06g0194900_circ_g.24 Os06g0194900_circ_g.25 Os06g0194900_circ_g.26 Os06g0194900_circ_g.27 Os06g0194900_circ_g.28 						
					
						Support reads
						1
					
						Tissues
						root
					
						Exon boundary  
						
							Yes-Yes							"Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.

						Splicing signals  
						
							CT-AC							The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.

						Number of exons covered
						Os06t0194900-02:11
Os06t0194900-04:8
Os06t0194900-03:11
Os06t0194900-01:11

General Information
CircRNA Name	Os06g0194900_circ_g.12
ID in PlantcircBase	osa_circ_030044
Alias	NA
Organism	Oryza sativa
Position	chr6: 4798323-4801273 JBrowse»
Reference genome	IRGSP-1.0.38
Type	ue-circRNA
Identification method	CIRCexplorer
Parent gene	Os06g0194900
Parent gene annotation	Sucrose synthase 2 (EC 2.4.1.13). (Os06t0194900-01);Sucrose synt hase 2 (EC 2.4.1.13). (Os06t0194900-02);Sucrose synthase 2 (EC 2 .4.1.13). (Os06t0194900-03);Similar to Sucrose synthase 2. (Os06 t0194900-04)
Parent gene strand	-
Alternative splicing	Os06g0194900_circ_g.13 Os06g0194900_circ_g.14 Os06g0194900_circ_g.15 Os06g0194900_circ_g.16 Os06g0194900_circ_g.17 Os06g0194900_circ_g.18 Os06g0194900_circ_g.19 Os06g0194900_circ_g.20 Os06g0194900_circ_g.21 Os06g0194900_circ_g.22 Os06g0194900_circ_g.23 Os06g0194900_circ_g.24 Os06g0194900_circ_g.25 Os06g0194900_circ_g.26 Os06g0194900_circ_g.27 Os06g0194900_circ_g.28
Support reads	1
Tissues	root
Exon boundary	Yes-Yes "Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.
Splicing signals	CT-AC The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.
Number of exons covered	Os06t0194900-02:11 Os06t0194900-04:8 Os06t0194900-03:11 Os06t0194900-01:11

			
						 Experimental Information
					
						Sanger sequencing for BSS  
						
							NA							Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".

						PCR primers for BSS   
						
							NA							PCR primers used in back-splicing site (BSS) validation.

						Sanger sequencing for FL   
						
							NA							Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.

						PCR primers for FL   
						
							NA							 PCR primers used in full-length (FL) sequence validation.

Experimental Information
Sanger sequencing for BSS	NA Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".
PCR primers for BSS	NA PCR primers used in back-splicing site (BSS) validation.
Sanger sequencing for FL	NA Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.
PCR primers for FL	NA PCR primers used in full-length (FL) sequence validation.

			
				
						 Sequences
					

				
						Splice junction sequence  
						
							TGCAATCAACTCATTGGGATGAGACGAGAAGGTGGCACCGAGGCGTTCGCGGAGACTGTGGAGG
CGAGCTAGCTTGGCAGCCATGACTCAATTTCAGGAAttgtgttcatcgttctcgacttcactgt
agagaagctcctcaatttcagggtggaaagcagtgagcctcttgtcagcctcggtgtacgggaa
gtagacac

									
								

					

						Assembled circRNA sequence  
						
							NA
The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).

					

						Full-length trsnacripts
						
							NA						
					

						Genomic sequence
						
							TTGTGTTCATCGTTCTCGACTTCACTGTAGAGAAGCTCCTCAATTTCAGGGTGGAAAGCAGTGA
GCCTCTTGTCAGCCTCGGTGTACGGGAAGTAGACACTCATGTCAGCTCCAGGAGAGACAATGTT
GAACTTGGGATCAAAAACATCTATGCCATGCACAACTCGGTAAAGCCCAGGAAGGGTGAATGCA
ATGTGTGATTCATACTGCCCCACAGTGTCCTTGCTGAAGAAACAGAGGAAACAAACATCAGATA
CCCGTTTAGGTGTTGGCACAACGCAGCAATATTCTACTGCTCTTTAGAAAATTTTACCTTCCAG
CAATTTCTTGGAATGTACTGGTGATGATGAAATCAGTGTGATTCATGGCGATAAGATCAGCAGT
GAATTGGCATGAGAAGTGGTACTGGCTGTCAAACTTGTCCAAGTATATGTCTGAGTTGGGGTAT
TTGGTTTTCTCCAAGGCATGAGCAATGGTACACTGTATCCATGTAGAAGAGAAATCATAAGTAA
TTGACTTAATGAAAGAAATATTTAAAGGAGTGGTTTACAACCAAACATACCTGGGTAACTCCTA
ATTTGTGAGCCAGCAGAGTGGCAACAAGGTTTCCATCACTGTAATTGCCAATGATGAGATCAGG
TTTGGCTTGCATTTCCCTCATAATTTCGTTTGCAACATCCTGCAACCAAAAAAAAAAAGATGAG
CTCTCAGAATTCATGGTTTGTGCTCAGCTCTGAAGGACGTTGTCAGATAAACCATTTACCTCAG
TGTATGTTTCCAGGAATGGCCAGACATCAAAACGGGAGATCCACTTGCGGAGGATACCATTCTC
ACTCCTGAATGGAACACGAAGAATGTCAGTGTGCTCAGTTCCAATAACCTTCTCCACACGCTGG
CCGCATGTAGTACCAACAGCATCAGGCAACAGCCTGGTTACCTGCATCAAGTAAAATCATGTCC
GCACGTTACTCTACAATTCGCACTGAGAAGTGTTTAAAACTTGAAACATTCAAGACCAACATCT
TGAACATACAATGAGGATCTTAGGTGTGATATCAAGGCCTTGCTGCTTGATCCTCAAAAGCATC
TCATTCTCCAAAGCGCGGACTTGGTCCAAAATGTACACAACCTGCAAACAACAGAATAACAGGT
CAAAACTAGAAATATTTGAAGTACTGTATATAAGGGGAAAATTTGTTAAAAAGCTCTACCTGAC
CACCAGTATCAGGGTATCCCAACACATTGGATTGGGCAAAGTATCCATGCGGAGACAGGATAAC
AACATTGAACATCATTGGAATAGTTCCAAGGAACTTCTCCAAGTTGGCCGGATCAGGGGCCTCA
AGAAGGTCAAGAAGCAAGTGGATGGTGTCAAGCACACGCTTTGCACAGTCACCCCAACCCTTCT
CCAAACCGAGCTCTTGGAACCTGTATTCAAATCATGAATCACATTGTAAGGAATTATTCCATTT
GCAGTAGTATAACATGGGCTATATGATAAGGAGAAATAATAAAGTAATCACCTGTGGTTGAACT
CCGAGTAGGGCGTGTCTTGAGGAATGCCCATCAGATATTCTTCTGCCTTTCTAAGGGATGATTG
GAGCCCACGAAGGCTCTGAATTCTGTCATTCAGCATCATTGTCTGTAATAGAAAATTCGGATCC
CGTCATTTGGTGGAACTTACAGAGAATGTCAAGTGGGTTTCTAAAGGACTAACATTTAAAGCAA
TTCACACAAGAAAAAACATCTAGTATAAAAGCATTTGGTATGTTCCACAAATTGGAAGCTTACC
GTGCCCTTGTGGTTATGGGCTTTCAGGAAGTTCAGCAAGGGGTAGAGGCTCTCCTTGTCCTGGA
ACAACTTGGACGACAGGTGACGGTTAAGGAACTGCACCCCATTTCCGATGGACTTGGACATGGA
CGGGCGCGGGAAGGAGGCATTGAAGGGCTCAAAATCAAGCTCAAGAACAAAGTTGCTGTTGGTG
CTGTTTAAGAAAAACAGAAGTAAAATTCAGTCACTGTTATTTTGCTTCAGTTATAATCTGCAAA
TCGTCGTTCTGGTACTTACTGTCCATCAACAAGCTGTTCCTTGAATGCCAAGTACTCAGAAACA
CTCAGCTCTTCCACTGCCAACTCACTTACATTCACCCGAATGTAGTCCCAGACACCAGGCCTTG
GCCTGATGGCCAGTGCAACCCAGGGCGGCAGCACAATGGCTTCCTACATACAGTCAAGGAAGTA
AGTTAGAAAGACTGGTATTTGACTTTGAGTTGACTATCATAACCATCCTGGCTCATTGCCAAAT
TTACCTGAGCAGCCCGGAGAATGTCTTCAAAGGGAGCATATTTCTCTTTGTCAGCTTCGATCAA
GGCATCGAACTCCGCAAGCAGCTGGTGACGCTGGAGCATTCCCTTTCCCTGGTTAACATACCTG
CATAGAGTGATATTTAAGAAATAGAACCAATGCTTAGATCTCACATCCTTTCTGCGGCTGAACT
ATGTTAATGGCACTACCACATAAACCTGATTTTTACTTCTTATTTTTAAGACCACATGATCTGT
ACTTAATCTAGCTATGAACAAACAATATTTCAACATCATCTAAGATTCATGACTCAAGACAAAA
ATGTTAGAGCTCATCACAGATTATTATAGATACCATCATTAAAACTAAAGAGATGCATAACCTT
GTCAGCTAAGAATTTGTAACATACTAACATGTTATCGTTTCACATCTGGGTTGACTAAGAACTA
ACCAACTGTATGGATAAAATCATTGAAAACTCAAAACAATTAGTAGCAGGTTCCAAGAAGACAC
AAGATATTATATTGAGATCTTCACCTAGAGAAGAGTGCAATCAACTCATTGGGATGAGACGAGA
AGGTGGCACCGAGGCGTTCGCGGAGACTGTGGAGGCGAGCTAGCTTGGCAGCCATGACTCAATT
TCAGGAA
						
					

			
		

Sequences
Splice junction sequence	TGCAATCAACTCATTGGGATGAGACGAGAAGGTGGCACCGAGGCGTTCGCGGAGACTGTGGAGG CGAGCTAGCTTGGCAGCCATGACTCAATTTCAGGAAttgtgttcatcgttctcgacttcactgt agagaagctcctcaatttcagggtggaaagcagtgagcctcttgtcagcctcggtgtacgggaa gtagacac
Assembled circRNA sequence	NA The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).
Full-length trsnacripts	NA
Genomic sequence	TTGTGTTCATCGTTCTCGACTTCACTGTAGAGAAGCTCCTCAATTTCAGGGTGGAAAGCAGTGA GCCTCTTGTCAGCCTCGGTGTACGGGAAGTAGACACTCATGTCAGCTCCAGGAGAGACAATGTT GAACTTGGGATCAAAAACATCTATGCCATGCACAACTCGGTAAAGCCCAGGAAGGGTGAATGCA ATGTGTGATTCATACTGCCCCACAGTGTCCTTGCTGAAGAAACAGAGGAAACAAACATCAGATA CCCGTTTAGGTGTTGGCACAACGCAGCAATATTCTACTGCTCTTTAGAAAATTTTACCTTCCAG CAATTTCTTGGAATGTACTGGTGATGATGAAATCAGTGTGATTCATGGCGATAAGATCAGCAGT GAATTGGCATGAGAAGTGGTACTGGCTGTCAAACTTGTCCAAGTATATGTCTGAGTTGGGGTAT TTGGTTTTCTCCAAGGCATGAGCAATGGTACACTGTATCCATGTAGAAGAGAAATCATAAGTAA TTGACTTAATGAAAGAAATATTTAAAGGAGTGGTTTACAACCAAACATACCTGGGTAACTCCTA ATTTGTGAGCCAGCAGAGTGGCAACAAGGTTTCCATCACTGTAATTGCCAATGATGAGATCAGG TTTGGCTTGCATTTCCCTCATAATTTCGTTTGCAACATCCTGCAACCAAAAAAAAAAAGATGAG CTCTCAGAATTCATGGTTTGTGCTCAGCTCTGAAGGACGTTGTCAGATAAACCATTTACCTCAG TGTATGTTTCCAGGAATGGCCAGACATCAAAACGGGAGATCCACTTGCGGAGGATACCATTCTC ACTCCTGAATGGAACACGAAGAATGTCAGTGTGCTCAGTTCCAATAACCTTCTCCACACGCTGG CCGCATGTAGTACCAACAGCATCAGGCAACAGCCTGGTTACCTGCATCAAGTAAAATCATGTCC GCACGTTACTCTACAATTCGCACTGAGAAGTGTTTAAAACTTGAAACATTCAAGACCAACATCT TGAACATACAATGAGGATCTTAGGTGTGATATCAAGGCCTTGCTGCTTGATCCTCAAAAGCATC TCATTCTCCAAAGCGCGGACTTGGTCCAAAATGTACACAACCTGCAAACAACAGAATAACAGGT CAAAACTAGAAATATTTGAAGTACTGTATATAAGGGGAAAATTTGTTAAAAAGCTCTACCTGAC CACCAGTATCAGGGTATCCCAACACATTGGATTGGGCAAAGTATCCATGCGGAGACAGGATAAC AACATTGAACATCATTGGAATAGTTCCAAGGAACTTCTCCAAGTTGGCCGGATCAGGGGCCTCA AGAAGGTCAAGAAGCAAGTGGATGGTGTCAAGCACACGCTTTGCACAGTCACCCCAACCCTTCT CCAAACCGAGCTCTTGGAACCTGTATTCAAATCATGAATCACATTGTAAGGAATTATTCCATTT GCAGTAGTATAACATGGGCTATATGATAAGGAGAAATAATAAAGTAATCACCTGTGGTTGAACT CCGAGTAGGGCGTGTCTTGAGGAATGCCCATCAGATATTCTTCTGCCTTTCTAAGGGATGATTG GAGCCCACGAAGGCTCTGAATTCTGTCATTCAGCATCATTGTCTGTAATAGAAAATTCGGATCC CGTCATTTGGTGGAACTTACAGAGAATGTCAAGTGGGTTTCTAAAGGACTAACATTTAAAGCAA TTCACACAAGAAAAAACATCTAGTATAAAAGCATTTGGTATGTTCCACAAATTGGAAGCTTACC GTGCCCTTGTGGTTATGGGCTTTCAGGAAGTTCAGCAAGGGGTAGAGGCTCTCCTTGTCCTGGA ACAACTTGGACGACAGGTGACGGTTAAGGAACTGCACCCCATTTCCGATGGACTTGGACATGGA CGGGCGCGGGAAGGAGGCATTGAAGGGCTCAAAATCAAGCTCAAGAACAAAGTTGCTGTTGGTG CTGTTTAAGAAAAACAGAAGTAAAATTCAGTCACTGTTATTTTGCTTCAGTTATAATCTGCAAA TCGTCGTTCTGGTACTTACTGTCCATCAACAAGCTGTTCCTTGAATGCCAAGTACTCAGAAACA CTCAGCTCTTCCACTGCCAACTCACTTACATTCACCCGAATGTAGTCCCAGACACCAGGCCTTG GCCTGATGGCCAGTGCAACCCAGGGCGGCAGCACAATGGCTTCCTACATACAGTCAAGGAAGTA AGTTAGAAAGACTGGTATTTGACTTTGAGTTGACTATCATAACCATCCTGGCTCATTGCCAAAT TTACCTGAGCAGCCCGGAGAATGTCTTCAAAGGGAGCATATTTCTCTTTGTCAGCTTCGATCAA GGCATCGAACTCCGCAAGCAGCTGGTGACGCTGGAGCATTCCCTTTCCCTGGTTAACATACCTG CATAGAGTGATATTTAAGAAATAGAACCAATGCTTAGATCTCACATCCTTTCTGCGGCTGAACT ATGTTAATGGCACTACCACATAAACCTGATTTTTACTTCTTATTTTTAAGACCACATGATCTGT ACTTAATCTAGCTATGAACAAACAATATTTCAACATCATCTAAGATTCATGACTCAAGACAAAA ATGTTAGAGCTCATCACAGATTATTATAGATACCATCATTAAAACTAAAGAGATGCATAACCTT GTCAGCTAAGAATTTGTAACATACTAACATGTTATCGTTTCACATCTGGGTTGACTAAGAACTA ACCAACTGTATGGATAAAATCATTGAAAACTCAAAACAATTAGTAGCAGGTTCCAAGAAGACAC AAGATATTATATTGAGATCTTCACCTAGAGAAGAGTGCAATCAACTCATTGGGATGAGACGAGA AGGTGGCACCGAGGCGTTCGCGGAGACTGTGGAGGCGAGCTAGCTTGGCAGCCATGACTCAATT TCAGGAA

			
						 Conservation Information
					
						Conserved circRNAs
						
							NA						
					
						PMCS
						0.219345965

Conservation Information
Conserved circRNAs	NA
PMCS	0.219345965

			
						 Functional Information
					
						Coding potential
						Y
					
						Potential coding position
						
							4801259-4801269(-)
						
						Potential amino acid sequence
						
							MAAKLARLHSLRERLGATFSSHPNELIALFSRYVNQGKGMLQRHQLLAEFDALIEADKEKYAPF
EDILRAAQEAIVLPPWVALAIRPRPGVWDYIRVNVSELAVEELSVSEYLAFKEQLVDGHTNSNF
VLELDFEPFNASFPRPSMSKSIGNGVQFLNRHLSSKLFQDKESLYPLLNFLKAHNHKGTTMMLN
DRIQSLRGLQSSLRKAEEYLMGIPQDTPYSEFNHRFQELGLEKGWGDCAKRVLDTIHLLLDLLE
APDPANLEKFLGTIPMMFNVVILSPHGYFAQSNVLGYPDTGGQVVYILDQVRALENEMLLRIKQ
QGLDITPKILIVTRLLPDAVGTTCGQRVEKVIGTEHTDILRVPFRSENGILRKWISRFDVWPFL
ETYTEDVANEIMREMQAKPDLIIGNYSDGNLVATLLAHKLGVTQCTIAHALEKTKYPNSDIYLD
KFDSQYHFSCQFTADLIAMNHTDFIITSTFQEIAGSKDTVGQYESHIAFTLPGLYRVVHGIDVF
DPKFNIVSPGADMSVYFPYTEADKRLTAFHPEIEELLYSEVENDEHNS*(-)
						
						Sponge-miRNAs
						
							NA						
					
						circRNA-miRNA-mRNA network
						 VISUALIZATION
					
						Potential function description
						NA

Functional Information
Coding potential	Y
Potential coding position	4801259-4801269(-)
Potential amino acid sequence	MAAKLARLHSLRERLGATFSSHPNELIALFSRYVNQGKGMLQRHQLLAEFDALIEADKEKYAPF EDILRAAQEAIVLPPWVALAIRPRPGVWDYIRVNVSELAVEELSVSEYLAFKEQLVDGHTNSNF VLELDFEPFNASFPRPSMSKSIGNGVQFLNRHLSSKLFQDKESLYPLLNFLKAHNHKGTTMMLN DRIQSLRGLQSSLRKAEEYLMGIPQDTPYSEFNHRFQELGLEKGWGDCAKRVLDTIHLLLDLLE APDPANLEKFLGTIPMMFNVVILSPHGYFAQSNVLGYPDTGGQVVYILDQVRALENEMLLRIKQ QGLDITPKILIVTRLLPDAVGTTCGQRVEKVIGTEHTDILRVPFRSENGILRKWISRFDVWPFL ETYTEDVANEIMREMQAKPDLIIGNYSDGNLVATLLAHKLGVTQCTIAHALEKTKYPNSDIYLD KFDSQYHFSCQFTADLIAMNHTDFIITSTFQEIAGSKDTVGQYESHIAFTLPGLYRVVHGIDVF DPKFNIVSPGADMSVYFPYTEADKRLTAFHPEIEELLYSEVENDEHNS*(-)
Sponge-miRNAs	NA
circRNA-miRNA-mRNA network	VISUALIZATION
Potential function description	NA

			
						 Other Information
					
						References
						Chu et al., 2017

circRNA

Detail information of Os06g0194900_circ_g.12

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