Detail information of Os06g0194900_circ_g.23


General Information
CircRNA Name Os06g0194900_circ_g.23
ID in PlantcircBase osa_circ_030054
Alias NA
Organism Oryza sativa
Position chr6: 4800390-4801273  JBrowse»
Reference genome IRGSP-1.0.38
Type   ue-circRNA
Identification method CIRCexplorer
Parent gene Os06g0194900
Parent gene annotation Sucrose synthase 2 (EC 2.4.1.13). (Os06t0194900-01);Sucrose synt
hase 2 (EC 2.4.1.13). (Os06t0194900-02);Sucrose synthase 2 (EC 2
.4.1.13). (Os06t0194900-03);Similar to Sucrose synthase 2. (Os06
t0194900-04)
Parent gene strand -
Alternative splicing Os06g0194900_circ_g.12 Os06g0194900_circ_g.13 Os06g0194900_circ_g.14 Os06g0194900_circ_g.15 Os06g0194900_circ_g.16 Os06g0194900_circ_g.17 Os06g0194900_circ_g.18 Os06g0194900_circ_g.19 Os06g0194900_circ_g.20 Os06g0194900_circ_g.21 Os06g0194900_circ_g.22 Os06g0194900_circ_g.24 Os06g0194900_circ_g.25 Os06g0194900_circ_g.26 Os06g0194900_circ_g.27 Os06g0194900_circ_g.28
Support reads 1
Tissues root
Exon boundary   Yes-Yes
Splicing signals   CT-AC
Number of exons covered Os06t0194900-01:3
Os06t0194900-02:3
Os06t0194900-03:3
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TGCAATCAACTCATTGGGATGAGACGAGAAGGTGGCACCGAGGCGTTCGCGGAGACTGTGGAGG
CGAGCTAGCTTGGCAGCCATGACTCAATTTCAGGAAtgtccatcaacaagctgttccttgaatg
ccaagtactcagaaacactcagctcttccactgccaactcacttacattcacccgaatgtagtc
ccagacac
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence TGTCCATCAACAAGCTGTTCCTTGAATGCCAAGTACTCAGAAACACTCAGCTCTTCCACTGCCA
ACTCACTTACATTCACCCGAATGTAGTCCCAGACACCAGGCCTTGGCCTGATGGCCAGTGCAAC
CCAGGGCGGCAGCACAATGGCTTCCTACATACAGTCAAGGAAGTAAGTTAGAAAGACTGGTATT
TGACTTTGAGTTGACTATCATAACCATCCTGGCTCATTGCCAAATTTACCTGAGCAGCCCGGAG
AATGTCTTCAAAGGGAGCATATTTCTCTTTGTCAGCTTCGATCAAGGCATCGAACTCCGCAAGC
AGCTGGTGACGCTGGAGCATTCCCTTTCCCTGGTTAACATACCTGCATAGAGTGATATTTAAGA
AATAGAACCAATGCTTAGATCTCACATCCTTTCTGCGGCTGAACTATGTTAATGGCACTACCAC
ATAAACCTGATTTTTACTTCTTATTTTTAAGACCACATGATCTGTACTTAATCTAGCTATGAAC
AAACAATATTTCAACATCATCTAAGATTCATGACTCAAGACAAAAATGTTAGAGCTCATCACAG
ATTATTATAGATACCATCATTAAAACTAAAGAGATGCATAACCTTGTCAGCTAAGAATTTGTAA
CATACTAACATGTTATCGTTTCACATCTGGGTTGACTAAGAACTAACCAACTGTATGGATAAAA
TCATTGAAAACTCAAAACAATTAGTAGCAGGTTCCAAGAAGACACAAGATATTATATTGAGATC
TTCACCTAGAGAAGAGTGCAATCAACTCATTGGGATGAGACGAGAAGGTGGCACCGAGGCGTTC
GCGGAGACTGTGGAGGCGAGCTAGCTTGGCAGCCATGACTCAATTTCAGGAA
Conservation Information
Conserved circRNAs NA
PMCS 0.15341644
Functional Information
Coding potential Y
Potential coding position 4801257-4800476(+)
4801274-4801242(+)
4801259-4801269(-)
Potential amino acid sequence MTQFQECPSTSCSLNAKYSETLSSSTANSLTFTRM*(+)
MSINKLFLECQVLRNTQLFHCQLTYIHPNVVPDTRPWPDGQCNPGRQHNGFLSSPENVFKGSIF
LFVSFDQGIELRKQLVTLEHSLSLVNIPREECNQLIGMRREGGTEAFAETVEAS*(+)
MAAKLARLHSLRERLGATFSSHPNELIALFSRYVNQGKGMLQRHQLLAEFDALIEADKEKYAPF
EDILRAAQEAIVLPPWVALAIRPRPGVWDYIRVNVSELAVEELSVSEYLAFKEQLVDGHS*(-)
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017