Detail information of Os06g0194900_circ_g.17


General Information
CircRNA Name Os06g0194900_circ_g.17
ID in PlantcircBase osa_circ_030049
Alias NA
Organism Oryza sativa
Position chr6: 4798885-4799001  JBrowse»
Reference genome IRGSP-1.0.38
Type   ui-circRNA
Identification method CIRCexplorer
Parent gene Os06g0195025
Parent gene annotation Hypothetical protein. (Os06t0195025-00)
Parent gene strand +
Alternative splicing Os06g0194900_circ_g.12 Os06g0194900_circ_g.13 Os06g0194900_circ_g.14 Os06g0194900_circ_g.15 Os06g0194900_circ_g.16 Os06g0194900_circ_g.18 Os06g0194900_circ_g.19 Os06g0194900_circ_g.20 Os06g0194900_circ_g.21 Os06g0194900_circ_g.22 Os06g0194900_circ_g.23 Os06g0194900_circ_g.24 Os06g0194900_circ_g.25 Os06g0194900_circ_g.26 Os06g0194900_circ_g.27 Os06g0194900_circ_g.28
Support reads 2
Tissues root
Exon boundary   Yes-Yes
Splicing signals   CT-AC
Number of exons covered Os06t0194900-04:1
Os06t0194900-02:1
Os06t0194900-03:1
Os06t0194900-01:1
Os06t0194900-04:1
Os06t0194900-02:1
Os06t0195025-00:1
Os06t0194900-03:1
Os06t0194900-01:1
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TGCCAATGATGAGATCAGGTTTGGCTTGCATTTCCCTCATAATTTCGTTTGCAACATCctgggt
aactcctaatttgtgagccagcagagtggcaacaaggtttccatcactgtaat
Assembled circRNA sequence   Yes
Full-length trsnacripts Transcript length: 117
Transcript exons: 4798885-4799001
CTGGGTAACTCCTAATTTGTGAGCCAGCAGAGTGGCAACAAGGTTTCCATCACTGTAATTGCCA
ATGATGAGATCAGGTTTGGCTTGCATTTCCCTCATAATTTCGTTTGCAACATC

Genomic sequence CTGGGTAACTCCTAATTTGTGAGCCAGCAGAGTGGCAACAAGGTTTCCATCACTGTAATTGCCA
ATGATGAGATCAGGTTTGGCTTGCATTTCCCTCATAATTTCGTTTGCAACATC
Conservation Information
Conserved circRNAs NA
PMCS 0.17319067
Functional Information
Coding potential Y
Potential coding position 4798950-4798903(+)
4798985-4798887(-)
Potential amino acid sequence MMRSGLACISLIISFATSWVTPNL*(+)
MREMQAKPDLIIGNYSDGNLVATLLAHKLGVTQDVANEIMREMQAKPDLIIGNYSDGNLVATLL
AHKLGVTQDVANEIMREMQAKPDLIIGNYSDGNLVATLLAHKLGVTQDVANEIMREMQAKPDLI
IGNYSDGNLVATLLAHKLGVTQ(-)
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017