Detail information of AT2G07050_circ_g.4


General Information
CircRNA Name AT2G07050_circ_g.4
ID in PlantcircBase ath_circ_012997
Alias At_ciR1121
Organism Arabidpsis thaliana
Position chr2: 2925621-2926524  JBrowse»
Reference genome TAIR10.38
Type   ue-circRNA
Identification method KNIFE, PcircRNA_finder, circRNA_finder, find_circ
Parent gene AT2G07050
Parent gene annotation Cycloartenol synthase
Parent gene strand +
Alternative splicing AT2G07050_circ_g.1 AT2G07050_circ_g.2 AT2G07050_circ_g.3 AT2G07050_circ_g.5 AT2G07050_circ_g.6 AT2G07050_circ_g.7 AT2G07050_circ_g.8 AT2G07050_circ_g.9 AT2G07050_circ_g.10 AT2G07050_circ_g.11 AT2G07050_circ_g.12 AT2G07050_circ_g.13 AT2G07050_circ_g.14 AT2G07050_circ_g.15 AT2G07050_circ_g.16 AT2G07050_circ_g.17
Support reads 5/19
Tissues leaf/leaf, whole_plant
Exon boundary   Yes-Yes
Splicing signals   GT-AG
Number of exons covered AT2G07050.1:4
AT2G07050.2:4
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   ATACTGTAAATAAAGGTACTTGGAGCTTTTGAATGGTCCGGAAATAACCCACTGCCACCTGAGA
TATGGCTTCTCCCATATTTCCTGCCAATACATCCAGttttcaagagaaaatttgattagcccag
ttttacctcaagtcaaaatcgaagacactgatgatgttacagaggagatggtggaaaccacgtt
aaagaggg
Assembled circRNA sequence   Yes
Full-length trsnacripts Transcript length: 556
Transcript exons: 2925621-2925806,2925886-2925975,2926142-2926336,2926440-
2926524
TTTTCAAGAGAAAATTTGATTAGCCCAGTTTTACCTCAAGTCAAAATCGAAGACACTGATGATG
TTACAGAGGAGATGGTGGAAACCACGTTAAAGAGGGGTCTAGATTTCTATTCAACTATACAGGC
ACACGACGGGCACTGGCCAGGTGATTATGGTGGTCCTATGTTTCTTCTCCCAGGACTGATAATT
ACACTCTCCATAACTGGAGCACTGAATACAGTATTGTCGGAACAACATAAACAAGAAATGCGCC
GTTATCTCTATAATCACCAGAATGAGGACGGAGGTTGGGGTTTACATATTGAGGGCCCTAGCAC
CATGTTTGGGTCTGTGTTGAACTATGTTACTCTAAGGTTGCTTGGAGAAGGACCTAACGATGGA
GATGGAGATATGGAGAAAGGACGAGACTGGATACTAAATCATGGTGGTGCTACCAATATTACAT
CTTGGGGGAAAATGTGGCTATCGGTACTTGGAGCTTTTGAATGGTCCGGAAATAACCCACTGCC
ACCTGAGATATGGCTTCTCCCATATTTCCTGCCAATACATCCAG

Genomic sequence TTTTCAAGAGAAAATTTGATTAGCCCAGTTTTACCTCAAGTCAAAATCGAAGACACTGATGATG
TTACAGAGGAGATGGTGGAAACCACGTTAAAGAGGGGTCTAGATTTCTATTCAACTATACAGGC
ACACGACGGGCACTGGCCAGGTGATTATGGTGGTCCTATGTTTCTTCTCCCAGGACTGGTCAGT
TCATATGTTTCGTGCCTAAGCTTTCTTTTGCAAATTTTACGGAAAACTTGACAAAAACTACTTT
TGATTACAGATAATTACACTCTCCATAACTGGAGCACTGAATACAGTATTGTCGGAACAACATA
AACAAGAAATGCGCCGTTATCTCTATAATCACCAGGCAAGAAATTTCTCGTATCTTTACTATAA
TTCTGTTTCCTTGCAATGCTGTACTTGGATTTTCCATCGCAAAATAGATGTTTACACATCTTTC
TGTTTCAAAGATTTTCGTCTTCTACTTTCTAATTGTTAAACTAATTTGCACTATTGGTGGCATG
TGGTTTCAGAATGAGGACGGAGGTTGGGGTTTACATATTGAGGGCCCTAGCACCATGTTTGGGT
CTGTGTTGAACTATGTTACTCTAAGGTTGCTTGGAGAAGGACCTAACGATGGAGATGGAGATAT
GGAGAAAGGACGAGACTGGATACTAAATCATGGTGGTGCTACCAATATTACATCTTGGGGGAAA
ATGTGGCTATCGGTACTAAAGTTTTGACCTCTATCTGTCCTTTAAAGTTATCGTATGAAAATTT
CTGTTACTTGACTCATCTTTTTGCTTGGATCTGCTAATACTGTAAATAAAGGTACTTGGAGCTT
TTGAATGGTCCGGAAATAACCCACTGCCACCTGAGATATGGCTTCTCCCATATTTCCTGCCAAT
ACATCCAG
Conservation Information
Conserved circRNAs NA
PMCS 0.218016043
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Ye et al., 2015;Chu et al., 2017