Detail information of AT2G07050_circ_g.5


General Information
CircRNA Name AT2G07050_circ_g.5
ID in PlantcircBase ath_circ_012998
Alias At_ciR312, AT2G07050_C1
Organism Arabidpsis thaliana
Position chr2: 2925886-2926336  JBrowse»
Reference genome TAIR10.38
Type   e-circRNA
Identification method CIRCexplorer, CIRI, KNIFE, PcircRNA_finder, circRNA_finder, find_circ, CIRI2
Parent gene AT2G07050
Parent gene annotation Cycloartenol synthase
Parent gene strand +
Alternative splicing AT2G07050_circ_g.1 AT2G07050_circ_g.2 AT2G07050_circ_g.3 AT2G07050_circ_g.4 AT2G07050_circ_g.6 AT2G07050_circ_g.7 AT2G07050_circ_g.8 AT2G07050_circ_g.9 AT2G07050_circ_g.10 AT2G07050_circ_g.11 AT2G07050_circ_g.12 AT2G07050_circ_g.13 AT2G07050_circ_g.14 AT2G07050_circ_g.15 AT2G07050_circ_g.16 AT2G07050_circ_g.17
Support reads 29/5
Tissues leaf/root, leaf, aerial, whole_plant
Exon boundary   Yes-Yes
Splicing signals   GT-AG
Number of exons covered AT2G07050.1:2
AT2G07050.2:2
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   ACCTAACGATGGAGATGGAGATATGGAGAAAGGACGAGACTGGATACTAAATCATGGTGGTGCT
ACCAATATTACATCTTGGGGGAAAATGTGGCTATCGataattacactctccataactggagcac
tgaatacagtattgtcggaacaacataaacaagaaatgcgccgttatctctataatcaccaggc
aagaaatt
Assembled circRNA sequence   Yes
Full-length trsnacripts Transcript length: 285
Transcript exons: 2925886-2925975,2926142-2926336
ATAATTACACTCTCCATAACTGGAGCACTGAATACAGTATTGTCGGAACAACATAAACAAGAAA
TGCGCCGTTATCTCTATAATCACCAGAATGAGGACGGAGGTTGGGGTTTACATATTGAGGGCCC
TAGCACCATGTTTGGGTCTGTGTTGAACTATGTTACTCTAAGGTTGCTTGGAGAAGGACCTAAC
GATGGAGATGGAGATATGGAGAAAGGACGAGACTGGATACTAAATCATGGTGGTGCTACCAATA
TTACATCTTGGGGGAAAATGTGGCTATCG

Genomic sequence ATAATTACACTCTCCATAACTGGAGCACTGAATACAGTATTGTCGGAACAACATAAACAAGAAA
TGCGCCGTTATCTCTATAATCACCAGGCAAGAAATTTCTCGTATCTTTACTATAATTCTGTTTC
CTTGCAATGCTGTACTTGGATTTTCCATCGCAAAATAGATGTTTACACATCTTTCTGTTTCAAA
GATTTTCGTCTTCTACTTTCTAATTGTTAAACTAATTTGCACTATTGGTGGCATGTGGTTTCAG
AATGAGGACGGAGGTTGGGGTTTACATATTGAGGGCCCTAGCACCATGTTTGGGTCTGTGTTGA
ACTATGTTACTCTAAGGTTGCTTGGAGAAGGACCTAACGATGGAGATGGAGATATGGAGAAAGG
ACGAGACTGGATACTAAATCATGGTGGTGCTACCAATATTACATCTTGGGGGAAAATGTGGCTA
TCG
Conservation Information
Conserved circRNAs NA
PMCS 0.62898616
Functional Information
Coding potential Y
Potential coding position 2925949-2926333(+)
Potential amino acid sequence MRRYLYNHQNEDGGWGLHIEGPSTMFGSVLNYVTLRLLGEGPNDGDGDMEKGRDWILNHGGATN
ITSWGKMWLSIITLSITGALNTVLSEQHKQEMRRYLYNHQNEDGGWGLHIEGPSTMFGSVLNYV
TLRLLGEGPNDGDGDMEKGRDWILNHGGATNITSWGKMWLSIITLSITGALNTVLSEQHKQEMR
RYLYNHQNEDGGWGLHIEGPSTMFGSVLNYVTLRLLGEGPNDGDGDMEKGRDWILNHGGATNIT
SWGKMWLSIITLSITGALNTVLSEQHKQEMRRYLYNHQNEDGGWGLHIEGPSTMFGSVLNYVTL
RLLGEGPNDGDGDMEKGRDWILNHGGATNITSWGKMWLS(+)
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description response to drought stress