Detail information of AT2G07050_circ_g.2


General Information
CircRNA Name AT2G07050_circ_g.2
ID in PlantcircBase ath_circ_012995
Alias At_ciR2671
Organism Arabidpsis thaliana
Position chr2: 2925621-2925806  JBrowse»
Reference genome TAIR10.38
Type   ue-circRNA
Identification method find_circ, CIRI-full
Parent gene AT2G07050
Parent gene annotation Cycloartenol synthase
Parent gene strand +
Alternative splicing AT2G07050_circ_g.1 AT2G07050_circ_g.3 AT2G07050_circ_g.4 AT2G07050_circ_g.5 AT2G07050_circ_g.6 AT2G07050_circ_g.7 AT2G07050_circ_g.8 AT2G07050_circ_g.9 AT2G07050_circ_g.10 AT2G07050_circ_g.11 AT2G07050_circ_g.12 AT2G07050_circ_g.13 AT2G07050_circ_g.14 AT2G07050_circ_g.15 AT2G07050_circ_g.16 AT2G07050_circ_g.17
Support reads 3
Tissues leaf
Exon boundary   Yes-Yes
Splicing signals   GT-AG
Number of exons covered AT2G07050.2:1
AT2G07050.1:1
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   AAGAGGGGTCTAGATTTCTATTCAACTATACAGGCACACGACGGGCACTGGCCAGGTGATTATG
GTGGTCCTATGTTTCTTCTCCCAGGACTGttttcaagagaaaatttgattagcccagttttacc
tcaagtcaaaatcgaagacactgatgatgttacagaggagatggtggaaaccacgtta
Assembled circRNA sequence   Yes
Full-length trsnacripts Transcript length: 186
Transcript exons: 2925621-2925806
TTTTCAAGAGAAAATTTGATTAGCCCAGTTTTACCTCAAGTCAAAATCGAAGACACTGATGATG
TTACAGAGGAGATGGTGGAAACCACGTTAAAGAGGGGTCTAGATTTCTATTCAACTATACAGGC
ACACGACGGGCACTGGCCAGGTGATTATGGTGGTCCTATGTTTCTTCTCCCAGGACTG

Genomic sequence TTTTCAAGAGAAAATTTGATTAGCCCAGTTTTACCTCAAGTCAAAATCGAAGACACTGATGATG
TTACAGAGGAGATGGTGGAAACCACGTTAAAGAGGGGTCTAGATTTCTATTCAACTATACAGGC
ACACGACGGGCACTGGCCAGGTGATTATGGTGGTCCTATGTTTCTTCTCCCAGGACTG
Conservation Information
Conserved circRNAs NA
PMCS 0.384483721
Functional Information
Coding potential Y
Potential coding position 2925696-2925803(+)
Potential amino acid sequence MVETTLKRGLDFYSTIQAHDGHWPGDYGGPMFLLPGLFSRENLISPVLPQVKIEDTDDVTEEMV
ETTLKRGLDFYSTIQAHDGHWPGDYGGPMFLLPGLFSRENLISPVLPQVKIEDTDDVTEEMVET
TLKRGLDFYSTIQAHDGHWPGDYGGPMFLLPGLFSRENLISPVLPQVKIEDTDDVTEEMVETTL
KRGLDFYSTIQAHDGHWPGDYGGPMFLLPGL(+)
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Ye et al., 2015