Detail information of AT2G07050_circ_g.7


General Information
CircRNA Name AT2G07050_circ_g.7
ID in PlantcircBase ath_circ_013000
Alias Ath_circ_FC0031, Ath_circ_FC1179
Organism Arabidpsis thaliana
Position chr2: 2925886-2928449  JBrowse»
Reference genome TAIR10.38
Type   e-circRNA
Identification method CIRCexplorer, PcircRNA_finder
Parent gene AT2G07050
Parent gene annotation Cycloartenol synthase
Parent gene strand +
Alternative splicing AT2G07050_circ_g.1 AT2G07050_circ_g.2 AT2G07050_circ_g.3 AT2G07050_circ_g.4 AT2G07050_circ_g.5 AT2G07050_circ_g.6 AT2G07050_circ_g.8 AT2G07050_circ_g.9 AT2G07050_circ_g.10 AT2G07050_circ_g.11 AT2G07050_circ_g.12 AT2G07050_circ_g.13 AT2G07050_circ_g.14 AT2G07050_circ_g.15 AT2G07050_circ_g.16 AT2G07050_circ_g.17
Support reads 3
Tissues whole_plant
Exon boundary   Yes-Yes
Splicing signals   GT-AG
Number of exons covered AT2G07050.1:7
AT2G07050.2:7
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   GGATACAGGTTTTGCTATTCAAGCGATTTTGGCAACTAACCTCGTCGAAGAATATGGGCCCGTT
TTGGAAAAAGCACATTCATTTGTCAAGAATTCCCAGataattacactctccataactggagcac
tgaatacagtattgtcggaacaacataaacaagaaatgcgccgttatctctataatcaccaggc
aagaaatt
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence ATAATTACACTCTCCATAACTGGAGCACTGAATACAGTATTGTCGGAACAACATAAACAAGAAA
TGCGCCGTTATCTCTATAATCACCAGGCAAGAAATTTCTCGTATCTTTACTATAATTCTGTTTC
CTTGCAATGCTGTACTTGGATTTTCCATCGCAAAATAGATGTTTACACATCTTTCTGTTTCAAA
GATTTTCGTCTTCTACTTTCTAATTGTTAAACTAATTTGCACTATTGGTGGCATGTGGTTTCAG
AATGAGGACGGAGGTTGGGGTTTACATATTGAGGGCCCTAGCACCATGTTTGGGTCTGTGTTGA
ACTATGTTACTCTAAGGTTGCTTGGAGAAGGACCTAACGATGGAGATGGAGATATGGAGAAAGG
ACGAGACTGGATACTAAATCATGGTGGTGCTACCAATATTACATCTTGGGGGAAAATGTGGCTA
TCGGTACTAAAGTTTTGACCTCTATCTGTCCTTTAAAGTTATCGTATGAAAATTTCTGTTACTT
GACTCATCTTTTTGCTTGGATCTGCTAATACTGTAAATAAAGGTACTTGGAGCTTTTGAATGGT
CCGGAAATAACCCACTGCCACCTGAGATATGGCTTCTCCCATATTTCCTGCCAATACATCCAGG
TAAAATGACAATCTCATGTGTTCTTGACTTTCTCAACTTATATACTGTTTAAATTTATTCTTTT
CCCTGTCTCCAATTGTTGATCTGACTAAACTATTCATTCAAATGAAGTGCCTCGTATTATCAAT
TCTTGGTTCAGCCGCTATTTATAAAGAATGGAAAAACCAGAGTGCTGTAACCATGCCCGTATCT
GTTTTGTCTCCTTTATGCTTCCTTAGGTTCAACTATTTATTTGGGATTTAATTATAGTTATATT
GGTAATGCGCTCCATAAGCAGTACATTATTTCAGACTTTATGATATGGAACACCCTCGATCATG
GACAACTCAAGTGAAGTAAATCTTGAATTTTTTTGTAAATCTGCTTGGAATCGAGCATGATTCA
AGCTTGTTCAAAGCACACTTATCGAATGTATTAACTATGTGTGGATTTACAAAGATGGATATGG
TTTTCTTTTGCTACAACTTGCTTTTTAGTTCTTATGCATATTGCTATAGTGCACAGTAAAGCAT
CAGAATAAGATTAATTTTCTCTTGCTCCAGGAAGGATGTGGTGCCATTGTCGAATGGTGTACTT
GCCGATGTCGTATTTGTATGGAAAAAGGTTTGTGGGTCCCATAACGTCCACTGTTTTATCACTG
AGAAAGGAGCTTTTCACAGTACCATATCATGAAGTCAACTGGAATGAAGCACGCAACCTTTGCG
CAAAGGTTCGTGGAATGGATGGTGGATTTTGCAACTATGCTAACACATAAGCTCATCCTTTGAC
GAAGTTACTTCCTTTCTTAAAAGACCTGAGCATTTGCAGTTTAAATGAGATCCTTGTTTGGCTG
AATAACACAATTAGATTAAATGATTCCTACTAGAATATACAGTACTCAAAATATAGGTTTTTAC
ACATATCGATGTGTATTCAGATGCTCAGGGGTAACTGTTTTGATGCTGATAGTTGCTTTTTTAT
TGAAGGAGGATTTATACTACCCACATCCACTTGTGCAAGATATTCTTTGGGCATCACTTCATAA
GATTGTTGAGCCTGTTCTGATGCGATGGCCTGGTGCAAATTTGAGAGAAAAGGCTATAAGAACC
GCAATAGAACATATTCATTATGAAGATGAGAATACTAGGTACATCTGCATAGGTCCCGTGAACA
AGGTATGCAAACTTCCACTACAGCCTCTGTACCATTGTCTTAACGATTGTTATTATTCTCTTTC
GCAAGTTCAGTATGAGGATATGTTCGACTTTGTGTTTTCTTTCTGTTTATGATTCCTCTACTAT
TTTTTTTGCCAGCCAATCCTCTTCTTTAATCATCTGTGTTCTGTGCTGTTATAGGTATTAAATA
TGCTTTGCTGTTGGGTAGAAGACCCAAACTCAGAGGCTTTCAAGTTGCACCTACCAAGAATCCA
TGACTTTCTCTGGTTAGCTGAAGATGGAATGAAGATGCAGGTACCGCATATTTGTATATATGAT
TATGTTATGTAGATTATATGGACCACGGTTACTGCTGAACCAGTACAAATATTATGTCTCTGGA
ATCATTAGCTCAACAGTATACAAATATACACTAAAAAATTTGATAGTACTCAGAATGGCTTTAC
TACATTAACTTATATGAAGTTGGGAGTTTTACCTAGTATGTGTTTGATAGAATCATAAGAAAGA
AACGAACAACCTTGATAAAGCTCTTCCCTGTTTCTTTTTCCTCCAGCCAACCAAAGCCCCTACT
TTACTTTCTATCCAATTACTAGTTATAAACATTGAACCTGTTGTCCATACTCTAATGCAGCAGC
TATTGACAGGGTTATAACGGAAGCCAGCTATGGGATACAGGTTTTGCTATTCAAGCGATTTTGG
CAACTAACCTCGTCGAAGAATATGGGCCCGTTTTGGAAAAAGCACATTCATTTGTCAAGAATTC
CCAG
Conservation Information
Conserved circRNAs NA
PMCS 0.116231956
Functional Information
Coding potential Y
Potential coding position 2925949-2928446(+)
Potential amino acid sequence MRRYLYNHQNEDGGWGLHIEGPSTMFGSVLNYVTLRLLGEGPNDGDGDMEKGRDWILNHGGATN
ITSWGKMWLSVLGAFEWSGNNPLPPEIWLLPYFLPIHPGRMWCHCRMVYLPMSYLYGKRFVGPI
TSTVLSLRKELFTVPYHEVNWNEARNLCAKEDLYYPHPLVQDILWASLHKIVEPVLMRWPGANL
REKAIRTAIEHIHYEDENTRYICIGPVNKVLNMLCCWVEDPNSEAFKLHLPRIHDFLWLAEDGM
KMQGYNGSQLWDTGFAIQAILATNLVEEYGPVLEKAHSFVKNSQIITLSITGALNTVLSEQHKQ
EMRRYLYNHQNEDGGWGLHIEGPSTMFGSVLNYVTLRLLGEGPNDGDGDMEKGRDWILNHGGAT
NITSWGKMWLSVLGAFEWSGNNPLPPEIWLLPYFLPIHPGRMWCHCRMVYLPMSYLYGKRFVGP
ITSTVLSLRKELFTVPYHEVNWNEARNLCAKEDLYYPHPLVQDILWASLHKIVEPVLMRWPGAN
LREKAIRTAIEHIHYEDENTRYICIGPVNKVLNMLCCWVEDPNSEAFKLHLPRIHDFLWLAEDG
MKMQGYNGSQLWDTGFAIQAILATNLVEEYGPVLEKAHSFVKNSQIITLSITGALNTVLSEQHK
QEMRRYLYNHQNEDGGWGLHIEGPSTMFGSVLNYVTLRLLGEGPNDGDGDMEKGRDWILNHGGA
TNITSWGKMWLSVLGAFEWSGNNPLPPEIWLLPYFLPIHPGRMWCHCRMVYLPMSYLYGKRFVG
PITSTVLSLRKELFTVPYHEVNWNEARNLCAKEDLYYPHPLVQDILWASLHKIVEPVLMRWPGA
NLREKAIRTAIEHIHYEDENTRYICIGPVNKVLNMLCCWVEDPNSEAFKLHLPRIHDFLWLAED
GMKMQGYNGSQLWDTGFAIQAILATNLVEEYGPVLEKAHSFVKNSQIITLSITGALNTVLSEQH
KQEMRRYLYNHQNEDGGWGLHIEGPSTMFGSVLNYVTLRLLGEGPNDGDGDMEKGRDWILNHGG
ATNITSWGKMWLSVLGAFEWSGNNPLPPEIWLLPYFLPIHPGRMWCHCRMVYLPMSYLYGKRFV
GPITSTVLSLRKELFTVPYHEVNWNEARNLCAKEDLYYPHPLVQDILWASLHKIVEPVLMRWPG
ANLREKAIRTAIEHIHYEDENTRYICIGPVNKVLNMLCCWVEDPNSEAFKLHLPRIHDFLWLAE
DGMKMQGYNGSQLWDTGFAIQAILATNLVEEYGPVLEKAHSFVKNSQ(+)
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017;Chen et al., 2017a