Detail information of Os03g0227700_circ_g.8


General Information
CircRNA Name Os03g0227700_circ_g.8
ID in PlantcircBase osa_circ_018645
Alias Os_ciR2412
Organism Oryza sativa
Position chr3: 6741601-6743168  JBrowse»
Reference genome IRGSP-1.0.38
Type   e-circRNA
Identification method CIRCexplorer, find_circ
Parent gene Os03g0227700
Parent gene annotation Cytochrome P450 family protein. (Os03t0227700-01)
Parent gene strand +
Alternative splicing Os03g0227700_circ_g.3 Os03g0227700_circ_g.4 Os03g0227700_circ_g.5 Os03g0227700_circ_g.6 Os03g0227700_circ_g.7 Os03g0227700_circ_g.9 Os03g0227700_circ_g.10 Os03g0227700_circ_g.11
Support reads 4/5
Tissues root/root
Exon boundary   Yes-Yes
Splicing signals   GT-AG
Number of exons covered Os03t0227700-01:4
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   CATTCCAAGCGGATGGAAGATCCTGCCGGTGTTAGCCGCGGTGCATCTGGACTCGTCCCTGTAC
GAGGACCCCCAGCGCTTCAATCCCTGGAGATGGAAGtcgcgtgctgccattctcggagtaatag
agaggaaaatggaagagcgggttgagaagctgagcaaggaggatgcaagcgtagagcaagacga
tcttctcg
Assembled circRNA sequence   Yes
Full-length trsnacripts Transcript length: 531
Transcript exons: 6741601-6741852,6742001-6742093,6742886-6742964,6743062-
6743168
TCGCGTGCTGCCATTCTCGGAGTAATAGAGAGGAAAATGGAAGAGCGGGTTGAGAAGCTGAGCA
AGGAGGATGCAAGCGTAGAGCAAGACGATCTTCTCGGATGGGCTCTGAAACAATCTAACCTTTC
AAAAGAGCAAATCCTGGACCTCTTGCTGAGCTTGCTCTTCGCCGGGCACGAGACGTCGTCCATG
GCGCTCGCCCTCGCCATCTTCTTCCTTGAAGGCTGCCCCAAGGCTGTCCAAGAACTGAGGGAGG
AGCATCTTGGGATTGCAAGGAGACAAAGGCTAAGAGGGGAGTGCAAATTGAGCTGGGAAGACTA
CAAAGAGATGGTTTTCACGCAATGTGTCATAAACGAGACGTTGCGGCTAGGAAACGTGGTCAGG
TTCCTGCACCGGAAGGTCATCAAGGACGTGCACTACAAGGGTTATGACATTCCAAGCGGATGGA
AGATCCTGCCGGTGTTAGCCGCGGTGCATCTGGACTCGTCCCTGTACGAGGACCCCCAGCGCTT
CAATCCCTGGAGATGGAAG

Genomic sequence TCGCGTGCTGCCATTCTCGGAGTAATAGAGAGGAAAATGGAAGAGCGGGTTGAGAAGCTGAGCA
AGGAGGATGCAAGCGTAGAGCAAGACGATCTTCTCGGATGGGCTCTGAAACAATCTAACCTTTC
AAAAGAGCAAATCCTGGACCTCTTGCTGAGCTTGCTCTTCGCCGGGCACGAGACGTCGTCCATG
GCGCTCGCCCTCGCCATCTTCTTCCTTGAAGGCTGCCCCAAGGCTGTCCAAGAACTGAGGGTAC
AGAGAATTACAGATTCGAAATTAACATCTACTGTCACTAGCTCAGTGCTACGTTTAACTGTAGA
GCAACAATTGCAGAAAGCGAAGGCATCAGAAATGACATGGGAATCGATTAGTTACACTCACACT
GACGCGTGACATGCAGGAGGAGCATCTTGGGATTGCAAGGAGACAAAGGCTAAGAGGGGAGTGC
AAATTGAGCTGGGAAGACTACAAAGAGATGGTTTTCACGCAATGTGTAAGGCCCCCCCTACTTT
GTTCCTTCCGATCCCTCCTCCCTAAACGCTACTAATATAAATCGGTGCAAAGGCTTTGTGCTAG
CGTAGCTCTTGCTGTTTTGTTTGGTCACTTGCGTAGAGAGATAGCAACTTCCCGAAATGTCATG
TACGAATGGAGACTGAAAGCTCTGCGAAATAATTGCCGGGCCACGTACTACAGTACTTACGCTC
CCTCTCTTCAGTTTGGATCGATCGAGCTAAGAAGGCGCACGCATGTGTGCATTGATCGATAGAG
TCGATCTGTTCTGCCTTGTAAGCTAGCCAGCTGAGGTTCTTTCGCCTTGGAAGTTTCTACAGGG
TGAGGCCCATCGTCTTGCAACGATCCAAATGCCATGACAAGTACCTGTTGTTGTAGGCTTCCAG
TAGCACGGCCTGCCCCCAAGAAGGTATCTGAATCTTCTGCATTGCTGTTCAGACGGCAGAGCAG
AACATGCCGAAATACCATTCCAGTCAGTTGCAGTATATGTGTGTGGTGGTATCAGATAAAGGAG
CAGAGTAATTTGAGGCCTTAGAAATTCAGATGAGTTGCTCGACAATTGTCGCCTACCGATCGAG
AATAAGTTGCATGCATGTATGTGATGTAATTATGGGTCTTAGTCAGCAGGATAGTTTAGTCGCT
GCAGTACTGTAGATTGTAGTACTTGCGTTCAAAGCAGACCCAAAACAGAACTTGCATTCAGGAA
ACAAAACATGAAAAAAGAAATATACAGTACTTGGCACTGATATTTCTTTTGTTTGGGTCCTTAT
TGCAGGTCATAAACGAGACGTTGCGGCTAGGAAACGTGGTCAGGTTCCTGCACCGGAAGGTCAT
CAAGGACGTGCACTACAAGGGTGAGTAGCTCGATTTCACTCTTCTTCCCTGAATCGACCTCTCC
TCTATCTGACAGCAGAAGCTAACTGAACTGAACTGAACTGAACTGAACTGAAGGTTATGACATT
CCAAGCGGATGGAAGATCCTGCCGGTGTTAGCCGCGGTGCATCTGGACTCGTCCCTGTACGAGG
ACCCCCAGCGCTTCAATCCCTGGAGATGGAAG
Conservation Information
Conserved circRNAs NA
PMCS 0.23927162
Functional Information
Coding potential Y
Potential coding position 6741638-6743165(+)
6743082-6741650(+)
6741811-6743065(-)
Potential amino acid sequence MEERVEKLSKEDASVEQDDLLGWALKQSNLSKEQILDLLLSLLFAGHETSSMALALAIFFLEGC
PKAVQELREEHLGIARRQRLRGECKLSWEDYKEMVFTQCVINETLRLGNVVRFLHRKVIKDVHY
KGYDIPSGWKILPVLAAVHLDSSLYEDPQRFNPWRWKSRAAILGVIERKMEERVEKLSKEDASV
EQDDLLGWALKQSNLSKEQILDLLLSLLFAGHETSSMALALAIFFLEGCPKAVQELREEHLGIA
RRQRLRGECKLSWEDYKEMVFTQCVINETLRLGNVVRFLHRKVIKDVHYKGYDIPSGWKILPVL
AAVHLDSSLYEDPQRFNPWRWKSRAAILGVIERKMEERVEKLSKEDASVEQDDLLGWALKQSNL
SKEQILDLLLSLLFAGHETSSMALALAIFFLEGCPKAVQELREEHLGIARRQRLRGECKLSWED
YKEMVFTQCVINETLRLGNVVRFLHRKVIKDVHYKGYDIPSGWKILPVLAAVHLDSSLYEDPQR
FNPWRWKSRAAILGVIERKMEERVEKLSKEDASVEQDDLLGWALKQSNLSKEQILDLLLSLLFA
GHETSSMALALAIFFLEGCPKAVQELREEHLGIARRQRLRGECKLSWEDYKEMVFTQCVINETL
RLGNVVRFLHRKVIKDVHYKGYDIPSGWKILPVLAAVHLDSSLYEDPQRFNPWRWK(+)
MEDPAGVSRGASGLVPVRGPPALQSLEMEVACCHSRSNREENGRAG*(+)
MARASAMDDVSCPAKSKLSKRSRICSFERLDCFRAHPRRSSCSTLASSLLSFSTRSSIFLSITP
RMAARDFHLQGLKRWGSSYRDESRCTAANTGRIFHPLGMS*(-)
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Ye et al., 2015;Chu et al., 2017