Detailed infomation of each circRNA
General Information | |
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CircRNA Name | Os03g0227700_circ_g.8 |
ID in PlantcircBase | osa_circ_018645 |
Alias | Os_ciR2412 |
Organism | Oryza sativa |
Position | chr3: 6741601-6743168 JBrowse» |
Reference genome | IRGSP-1.0.38 |
Type | e-circRNA |
Identification method | CIRCexplorer, find_circ |
Parent gene | Os03g0227700 |
Parent gene annotation |
Cytochrome P450 family protein. (Os03t0227700-01) |
Parent gene strand | + |
Alternative splicing | Os03g0227700_circ_g.3 Os03g0227700_circ_g.4 Os03g0227700_circ_g.5 Os03g0227700_circ_g.6 Os03g0227700_circ_g.7 Os03g0227700_circ_g.9 Os03g0227700_circ_g.10 Os03g0227700_circ_g.11 |
Support reads | 4/5 |
Tissues | root/root |
Exon boundary | Yes-Yes |
Splicing signals | GT-AG |
Number of exons covered | Os03t0227700-01:4 |
Conservation Information | |
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Conserved circRNAs | NA |
PMCS | 0.23927162 |
Functional Information | |
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Coding potential | Y |
Potential coding position |
6741638-6743165(+) 6743082-6741650(+) 6741811-6743065(-) |
Potential amino acid sequence |
MEERVEKLSKEDASVEQDDLLGWALKQSNLSKEQILDLLLSLLFAGHETSSMALALAIFFLEGC PKAVQELREEHLGIARRQRLRGECKLSWEDYKEMVFTQCVINETLRLGNVVRFLHRKVIKDVHY KGYDIPSGWKILPVLAAVHLDSSLYEDPQRFNPWRWKSRAAILGVIERKMEERVEKLSKEDASV EQDDLLGWALKQSNLSKEQILDLLLSLLFAGHETSSMALALAIFFLEGCPKAVQELREEHLGIA RRQRLRGECKLSWEDYKEMVFTQCVINETLRLGNVVRFLHRKVIKDVHYKGYDIPSGWKILPVL AAVHLDSSLYEDPQRFNPWRWKSRAAILGVIERKMEERVEKLSKEDASVEQDDLLGWALKQSNL SKEQILDLLLSLLFAGHETSSMALALAIFFLEGCPKAVQELREEHLGIARRQRLRGECKLSWED YKEMVFTQCVINETLRLGNVVRFLHRKVIKDVHYKGYDIPSGWKILPVLAAVHLDSSLYEDPQR FNPWRWKSRAAILGVIERKMEERVEKLSKEDASVEQDDLLGWALKQSNLSKEQILDLLLSLLFA GHETSSMALALAIFFLEGCPKAVQELREEHLGIARRQRLRGECKLSWEDYKEMVFTQCVINETL RLGNVVRFLHRKVIKDVHYKGYDIPSGWKILPVLAAVHLDSSLYEDPQRFNPWRWK(+) MEDPAGVSRGASGLVPVRGPPALQSLEMEVACCHSRSNREENGRAG*(+) MARASAMDDVSCPAKSKLSKRSRICSFERLDCFRAHPRRSSCSTLASSLLSFSTRSSIFLSITP RMAARDFHLQGLKRWGSSYRDESRCTAANTGRIFHPLGMS*(-) |
Sponge-miRNAs | NA |
circRNA-miRNA-mRNA network | VISUALIZATION |
Potential function description | NA |
Other Information | |
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References | Ye et al., 2015;Chu et al., 2017 |