Detail information of BGIOSGA019609_circ_g.1


General Information
CircRNA Name BGIOSGA019609_circ_g.1
ID in PlantcircBase osi_circ_015315
Alias Chr05:14940929_14945465(MH63RS2)
Organism Oryza sativa ssp. indica
Position chr5: 15637898-15642431  JBrowse»
Reference genome Oryza_indica.ASM465v1.42
Type   ei-circRNA
Identification method CIRI2
Parent gene BGIOSGA019609
Parent gene annotation NA
Parent gene strand +
Alternative splicing BGIOSGA019609_circ_g.2 BGIOSGA019609_circ_g.3 BGIOSGA019609_circ_g.4 BGIOSGA019609_circ_g.5 BGIOSGA019609_circ_g.6
Support reads NA
Tissues root, leaf, panicle
Exon boundary   No-Yes
Splicing signals   GT-TA
Number of exons covered BGIOSGA019609-TA:6
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   CTATGGATTGACAGAGACTTGTGCTGGAGCAGCCTTTTCTGAATGGGATGACACAAGTGTGGGC
CGTGTTGGTCCACCCCTTCCTTGTTGCTATGTCAAGgaaaccatactaggaagcagcggagcaa
gacggtttgccaagatctttgaaaccaacatcgcaaaactgtgaatgaggcttatggagcgaaa
atctttaa
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence GAAACCATACTAGGAAGCAGCGGAGCAAGACGGTTTGCCAAGATCTTTGAAACCAACATCGCAA
AACTGTGAATGAGGCTTATGGAGCGAAAATCTTTAACTCTACAAGCATCCACCTGTTTTGGTAA
GAGAGTTATAAAGGCAGAGTTCAACTTCTTGAATTTTGACACATGTCCATGCTGAATTGCCGTT
AGTAGATGGTTACACTTTAGAAGAGTTAAATGACAGCAACCATTAGTAGATGGGAAACTCATTT
TTTTTGTGTGTTATAAATTTCAGACACAGGTTTCAACTCTGATATGTGATTCAAAGCAACTTAA
GAAGCTACCTGCAATCAGTTCCAAGTTGCAGAGTGTTAAGCATGTTATCTATATTGAGGATGAA
CCTGTTGAGGCTGAGGTACTCAATCAAATGAAGCACTGGACAACATTTTCTTTTGGTGAAGTTG
AAGAATTGGGTAAAACATCACATACAGATGCAAGATTACCTTCAAGCACTGATACTGCAGTTAT
TATGTATACAAGTGGAAGTACGGGTCTTCCCAAGGTACACTTGTGCTCAAAGATATTCTGATTT
TTTCTGTCATATGCTGTTATCTATTTTTATTCATGAAAATAAATAAGGACAAAAGCAGGGGTCA
TTCTTTCTTGTTCCTCCTTTTCTTTTTGCTTCATCTGAAGGTGTACACACATGATGAGCCTACC
ATCCTGTTACTTTCACTGAACAAGAGCTTAAGTGATGTATGATATAGAGAATTACGATCCTATT
AGCCCATTAGCTTGACAGATATTATGATAATCTCTTGGGCCTATTCTCAACGTACTCACATAAC
TTCCTTTTGAACTGATGCTCTCCATAATTAAGGGCAACATTGAGAGTTATGATAATATGCAGTT
ATGCCCATTTAATTTACAAATGAGAAATAAAGCAGGACATTAAATCCTTTCTACAAATTAAATT
CACTTTCCTGATATATACTCTCTTTTCCTCTCTTCCCCAAAGGAAAGTTGGTTTTTCCTTGGTA
TTTTTGCAAGTGCAATTACCCACTTTGCTTATTGTGGAAGGATAGCAGGGATTGGAACAGGATG
AACCAAACTGATCCATCACTGCTTCATCCACTCCTCACCATCATGTAGAGATCCATGGACTGTT
CCAATGTACAATTAAGACCCTCTATAACCACTGGATCTCTAGGTTGACTCTAGTATTCAGAGAA
AAAAAATAAATAAATTCAGAAACCATATGCATTTTGATACGCGAAAAAGGCTCAAATTTGAAAT
TCATAACGAGAACATCATTTTGCACAAACAACTCAAAATTCCTCGGATTAGGAAAAACAGGTAT
AGATAAAATATATGAATTAACTGTTCATGAGTGTGACAACGTTCGTCTTTTTGACAAAATGATC
AGCATAATGCATATTTTTTTGTGCAAACTTGAATTACAATCCATTGTGGATCCACAGCTATGTA
CTTTCATTTATCACAATGTCAACCACTTTTGAGTTTGCAGTTCTTGTGTCCTCTTTTAATCCAG
TTTTATGGTTTCCTTTGACATAGGGTGTAATGATTACACATGGAAATATGGTGGCCACAACTGC
AGCTGTCATGACAATCATACCAAAACTTGGCACAGGGGATGTTTATCTGGCATACCTTCCGCTG
GCTCATGTCTTTGAACTAGCAGCAGAGGTGACATCTTTTGCAATTGAGAGATATGCCATTATTA
AGAACTGTGAATATTTCTATGACATATTGTTGTTTTGTTTGGCCAGACTGTCATGTTAGCTTCT
GGTGCTGCCATTGGATATGGCTCAGCTCTGACTATGACAGATACATCAAATAAAATAAAGAAGG
GGACAAAAGGAGATGTTTCTGCACTGAAGCCTACTCTTATGATTTCAGTCCCTGCAATTTTAGA
CCGCATCAGAGATGCCGTGTTTAAAAAGGTTCAAGATTCTCCTCTCATACCATCTATCTCAGTA
GTTTACACCATTATCTTTCCATCTTTGACTAGTTCTGCAATCTTTTATATGCCATTTGCATTCA
GCTGCAACATATCTTTAGAGTGCCTTTGATGCATTAATCATTTATATGTTTAAATATCTGCCTG
TGAATAAACTAAAGAAAAAAGTTTTGAACCATACAGGTCCTAATATTGTTTTATGTTAAGCGTT
ATCTGTATGGCCATGTACTTAATTTCCTTTTCGTTTTAGTAATGTTTGACTGTATTCGCACATG
CCACATATACATTGGTCCATCTTGGACATTTTCATGTCAACTTCTAATTTTTAGAAGGCCAAAT
AAGAACAAACAACATATGGGATATTGAGGTATTGTAATGTAAGGAAATGAAGGCAGCAATTCAT
AAAAATTGCAGTGCAGAGTTGGTGAGTGGTGGATTCACAACCACCACAACCTTATTTTTAAAGG
AGTGCTACTGCTAGCAATGTGCCCACGTATTTCAATGGATGTACATGCCATATGGGATCAGCTA
AAACCTAAATACTGCAAACAGTTTATATGTCACCACTTATACCTGACCACACAACTTGGTGGGG
TATAGAAGAGCACACTATCACCCCCAATTCAGTATTTTTAAGGAATTAAGATTAGGATATAGAT
GCACTGTTTGGTTGTCGTTTGCACATCTAGCAGCCTAGCAACTTGTAGATTTTTCTGTACCTTA
CACCAGGCATATCTTAAAAAAAAAATTGATGTTCTGGCTAGCTCAATGGGCAAAGTCAAGTGCA
GGCCCCAGCCATTTCTAGCGTAGTATAACATGCATGTTTTTGGTATCATACAACACTACAACCT
TCAGTTTTGGTGCACTGCTCTGGTCTGCATCTCTTATTTCCCAACCCTAGCCATTATAATGCCT
ACCATACCGTAGCACGCTTCATGTCTTGTCTAGCATACAAGTCTGAGCTTCGGCTGAGGCTGAT
AAGCCATAGAAAATGAAGCAACCGAAAATAAATTTTGGGTTAAACTGTTATACTCCCTCCGTTT
TTTAACATATGGCGCTGTTGACATTTTGAGATACATTTGACCATTCTTCTTATTAAAAAATATG
TAATTATCATTTATTTTATTATGATTTGATTTATTGTCAAATGTTCTTTAAGCATGGCTTAAAT
TTTTTTATATTCGCTCTAAAATTTTGAATAGGACGAATGATCAAACGTTTATCAAAAAGTTAAC
GGCATCATATATTAAAAATGGGAGGTACAAGGCTGGAGAATAGACTATGATGAGAAAACCCCAA
ATTCAACTCTAAAATTAAGTTTCAAATTCAAATTGGTTGTGGCTGATAAGCCAACAAGCAGATG
ATGAAACCGAAGGCTGGAAACATGTTTGAAACAATGAGTTTCTGTAGACTTAATATTTTAAATG
CATTGCATCAAATGGCATGTATCATGCAGGCAGAATTGAACGGTCAAATGTTATGATCATGCAC
CAAAATATGGTTTAAACATACTTCTCATCTCAAAACTTAATATTTAAATTATGTTTCCAGGTTG
GTGAGAAGGGTGGTCTGACCAAAAAGCTGTTTGACATTGCCTATAAACGAAATCTTGGAGCCAT
TGAAGGAAGTTGGTTTGGATCCTGGGCACCAGAGAGGATGATATGGGATAACCTCATTTTTAAA
CCAATACGTTCCATGCTTGGTGGGCGCATTAGATTTGTTCTTTGTGGTGGTGCACCTCTATCGA
GTGACACACAAAGATTTATGAATATATGTCTTGGGTAATTTCTTTTGTCCTATTTGGATTATCT
TAAATTTAACCATTTGCATCAGTGAGATGTCATGAAGAAGTATTCTTCCAAAAATTTCCACTGA
GTTTATTTGTTGAAGATTGTGTGCCAGTCGTAGAGCATAGTGTCATTTCTCGGATACTTGAATT
ATCTTTGTTTTCTTCGAAAAATGAGGCTAGAATTACATGAATTCCAAAAACATACAAGGAGTCA
ACTTTTTTTTTGTCTTATTGTACATCTTAAGTTTGTTTAAGACGTTACTAAAAAAAATACTGAT
TTTAATGAACTTACCTCATGGAAAATTCAAGTTCAATGCCATACTCAAGTCCTAGACATTGTTA
GAGTGTACGTTTGCAGGTAGTGCGCTCATCAAACCTTTGGATTTATTTATTTACAGAAAACAAA
ACATTTGTTGGATAAGCTCATAAAATTTGGGCGTGCTACTTATATGTTTTTTTAATTCAAACAG
TTTGTCAAAAATCACTTTATAGTGAAATTTGTATTTGCACGTTTAGTGAATCAAATGCTGAAAG
TTGAAATATTAAACAGAGGACCTTTCTAGAGTACATGCACTATGCTATAATGTGATGAGCTTCC
TTTTATTGTATGTCGCTGCATTTGTTTTTGGTTCTTATGCAGTTTTGAATTACCTGTGCTGCAG
TGTACCAGTAGGTCAAGGCTATGGATTGACAGAGACTTGTGCTGGAGCAGCCTTTTCTGAATGG
GATGACACAAGTGTGGGCCGTGTTGGTCCACCCCTTCCTTGTTGCTATGTCAAG
Conservation Information
Conserved circRNAs osa_circ_027413
PMCS
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Zhou et al., 2021