Detail information of Os03g0269000_circ_g.2


General Information
CircRNA Name Os03g0269000_circ_g.2
ID in PlantcircBase osa_circ_019079
Alias Os_ciR9214
Organism Oryza sativa
Position chr3: 8946534-8946662  JBrowse»
Reference genome IRGSP-1.0.38
Type   e-circRNA
Identification method find_circ
Parent gene Os03g0269000
Parent gene annotation Short chain alcohol dehydrogenase-like. (Os03t0269000-01);Short
chain alcohol dehydrogenase-like. (Os03t0269000-02)
Parent gene strand -
Alternative splicing Os03g0268900_circ_ag.1 Os03g0268900_circ_ag.2 Os03g0268900_circ_ag.3 Os03g0269000_circ_g.1 Os03g0269100_circ_g.1 Os03g0269100_circ_g.2
Support reads 2
Tissues root
Exon boundary   No-No
Splicing signals   GT-AG
Number of exons covered Os03t0269000-01:1
Os03t0269000-02:1
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   CAGATGATACGCAGATTCAAGATTAGTCGCCATCATAAAAGAGTATTCCTCGGCAGAAAATTCA
actgatgatatgaaaacaatgctccctgacccagatgctttcagaagaggatgcgaaagttggc
a
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence ACTGATGATATGAAAACAATGCTCCCTGACCCAGATGCTTTCAGAAGAGGATGCGAAAGTTGGC
ACAGATGATACGCAGATTCAAGATTAGTCGCCATCATAAAAGAGTATTCCTCGGCAGAAAATTC
A
Conservation Information
Conserved circRNAs NA
PMCS 0.384393734
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Ye et al., 2015