Detail information of Os03g0269100_circ_g.2


General Information
CircRNA Name Os03g0269100_circ_g.2
ID in PlantcircBase osa_circ_019081
Alias NA
Organism Oryza sativa
Position chr3: 8951312-8951635  JBrowse»
Reference genome IRGSP-1.0.38
Type   i-circRNA
Identification method CIRCexplorer
Parent gene Os03g0269100
Parent gene annotation Short chain alcohol dehydrogenase-like. (Os03t0269100-01);Simila
r to tropinone reductase. (Os03t0269100-02)
Parent gene strand -
Alternative splicing Os03g0268900_circ_ag.1 Os03g0268900_circ_ag.2 Os03g0268900_circ_ag.3 Os03g0269000_circ_g.1 Os03g0269000_circ_g.2 Os03g0269100_circ_g.1
Support reads 1
Tissues root
Exon boundary   No-No
Splicing signals   GA-TT
Number of exons covered 0
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   ATCGAAATTGGGTTCAGTGACGAGAAAGGCTGGGACCTAGATGGGGAAGCAAGGAGTTAAATTG
AGGAGAGATAAAGAGAAACTAAGCGAAGTGCTTTACgtcaaagtaacacatttctcaaagtaac
tcaaatgttcgatgaatttcagtgctaaagtggcacctagccttgatgttatatatgcaaactc
tccgctaa
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence GTCAAAGTAACACATTTCTCAAAGTAACTCAAATGTTCGATGAATTTCAGTGCTAAAGTGGCAC
CTAGCCTTGATGTTATATATGCAAACTCTCCGCTAAACATGAACTCTGACTTACCAACTAAGCA
TCATGACTAGCAGGCAGCAAAGTGGTTCAGCCATGGTCACATCTATGATTTATGCATTACTAAC
CATGTAGATGAAAATCGAGAGAGTCATGCTTGATCGAAATTGGGTTCAGTGACGAGAAAGGCTG
GGACCTAGATGGGGAAGCAAGGAGTTAAATTGAGGAGAGATAAAGAGAAACTAAGCGAAGTGCT
TTAC
Conservation Information
Conserved circRNAs NA
PMCS 0.220198663
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017