Detail information of Os03g0268900_circ_ag.1


General Information
CircRNA Name Os03g0268900_circ_ag.1
ID in PlantcircBase osa_circ_019075
Alias Os_ciR1377
Organism Oryza sativa
Position chr3: 8940833-8946700  JBrowse»
Reference genome IRGSP-1.0.38
Type   ag-circRNA
Identification method find_circ
Parent gene NA
Parent gene annotation NA
Parent gene strand NA
Alternative splicing Os03g0268900_circ_ag.2 Os03g0268900_circ_ag.3 Os03g0269000_circ_g.1 Os03g0269000_circ_g.2 Os03g0269100_circ_g.1 Os03g0269100_circ_g.2
Support reads 9/7
Tissues root/seed
Exon boundary   Yes-Yes
Splicing signals   CT-AC
Number of exons covered NA
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   GATGATACGCAGATTCAAGATTAGTCGCCATCATAAAAGAGTATTCCTCGGCAGAAAATTCAGT
GGTTGGCTTCCTTATGTTTGTCCCCACATTGTTTACgaggatgtcgagcttgccgccgaagcgg
tcagcgacgtcgccgatgaggcgctcccgctggtcccgcgcggagaggtcgcagacggagatgg
tgacgcgg
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence TOO LONG (>5KB) TO SHOW GENOMIC SEQUENCE OF THIS CIRCULAR RNA. PLEASE FIND THE CORRESPONDING GENOMIC SEQUENCE AT DOWNLOAD SECTION.
Conservation Information
Conserved circRNAs osi_circ_014184 osi_circ_014185
PMCS 0.702094845
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Ye et al., 2015;Chu et al., 2017