Detail information of Os03g0269100_circ_g.1


General Information
CircRNA Name Os03g0269100_circ_g.1
ID in PlantcircBase osa_circ_019080
Alias NA
Organism Oryza sativa
Position chr3: 8950810-8951244  JBrowse»
Reference genome IRGSP-1.0.38
Type   e-circRNA
Identification method CIRCexplorer
Parent gene Os03g0269100
Parent gene annotation Short chain alcohol dehydrogenase-like. (Os03t0269100-01);Simila
r to tropinone reductase. (Os03t0269100-02)
Parent gene strand -
Alternative splicing Os03g0268900_circ_ag.1 Os03g0268900_circ_ag.2 Os03g0268900_circ_ag.3 Os03g0269000_circ_g.1 Os03g0269000_circ_g.2 Os03g0269100_circ_g.2
Support reads 1
Tissues root
Exon boundary   Yes-Yes
Splicing signals   CT-AC
Number of exons covered Os03t0269100-01:2
Os03t0269100-02:2
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   GATGATACGCAGATTCAAGATTGGTGGCCATTATGAACGAGTAATCATCTGCAGAGTATTCAGT
GGTTTGTTTTGAAAAGTTTGTTCCCACGTTGTTCACatcttccacaagtgaagtcttcatgtac
catggtgcaacagaattggttcttatattgtctttcgcccactcacatgccaggttcttggcca
gctggttc
Assembled circRNA sequence   Yes
Full-length trsnacripts Transcript length: 324
Transcript exons: 8950810-8950916,8951028-8951244
ATCTTCCACAAGTGAAGTCTTCATGTACCATGGTGCAACAGAATTGGTTCTTATATTGTCTTTC
GCCCACTCACATGCCAGGTTCTTGGCCAGCTGGTTCATGGCACCTTTTGTCATCGCATAGACAG
AGCCAGAACTTACAGCCACCACTCCAGAGACTGACGATATGAAGACAACGCTTCCTGACCCAGA
TGATTTGAGAAGAGGATGAGCAAGTTGGCACAGATGATACGCAGATTCAAGATTGGTGGCCATT
ATGAACGAGTAATCATCTGCAGAGTATTCAGTGGTTTGTTTTGAAAAGTTTGTTCCCACGTTGT
TCAC

Genomic sequence ATCTTCCACAAGTGAAGTCTTCATGTACCATGGTGCAACAGAATTGGTTCTTATATTGTCTTTC
GCCCACTCACATGCCAGGTTCTTGGCCAGCTGGTTCATGGCACCTAAACAACACCCGAAGATAT
CTCGCAAGAATCATCAACGATGCATATCGGCTTTTTCACCTATGCCATCCATGAAAAAAAATGC
ATGTACTGCGGTAATATATATTGTACCTTTTGTCATCGCATAGACAGAGCCAGAACTTACAGCC
ACCACTCCAGAGACTGACGATATGAAGACAACGCTTCCTGACCCAGATGATTTGAGAAGAGGAT
GAGCAAGTTGGCACAGATGATACGCAGATTCAAGATTGGTGGCCATTATGAACGAGTAATCATC
TGCAGAGTATTCAGTGGTTTGTTTTGAAAAGTTTGTTCCCACGTTGTTCAC
Conservation Information
Conserved circRNAs NA
PMCS 0.308658985
Functional Information
Coding potential Y
Potential coding position 8951177-8950812(-)
8950842-8951206(-)
Potential amino acid sequence MATNLESAYHLCQLAHPLLKSSGSGSVVFISSVSGVVAVSSGSVYAMTKGAMNQLAKNLACEWA
KDNIRTNSVAPWYMKTSLVEDVNNVGTNFSKQTTEYSADDYSFIMATNLESAYHLCQLAHPLLK
SSGSGSVVFISSVSGVVAVSSGSVYAMTKGAMNQLAKNLACEWAKDNIRTNSVAPWYMKTSLVE
DVNNVGTNFSKQTTEYSADDYSFIMATNLESAYHLCQLAHPLLKSSGSGSVVFISSVSGVVAVS
SGSVYAMTKGAMNQLAKNLACEWAKDNIRTNSVAPWYMKTSLVEDVNNVGTNFSKQTTEYSADD
YSFIMATNLESAYHLCQLAHPLLKSSGSGSVVFISSVSGVVAVSSGSVYAMTKGAMNQLAKNLA
CEWAKDNIRTNSVAPWYMKTSLVED(-)
MVHEDFTCGRCEQRGNKLFKTNH*(-)
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017