Detailed infomation of each circRNA
General Information | |
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CircRNA Name | Os03g0269100_circ_g.1 |
ID in PlantcircBase | osa_circ_019080 |
Alias | NA |
Organism | Oryza sativa |
Position | chr3: 8950810-8951244 JBrowse» |
Reference genome | IRGSP-1.0.38 |
Type | e-circRNA |
Identification method | CIRCexplorer |
Parent gene | Os03g0269100 |
Parent gene annotation |
Short chain alcohol dehydrogenase-like. (Os03t0269100-01);Simila r to tropinone reductase. (Os03t0269100-02) |
Parent gene strand | - |
Alternative splicing | Os03g0268900_circ_ag.1 Os03g0268900_circ_ag.2 Os03g0268900_circ_ag.3 Os03g0269000_circ_g.1 Os03g0269000_circ_g.2 Os03g0269100_circ_g.2 |
Support reads | 1 |
Tissues | root |
Exon boundary | Yes-Yes |
Splicing signals | CT-AC |
Number of exons covered | Os03t0269100-01:2 Os03t0269100-02:2 |
Conservation Information | |
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Conserved circRNAs | NA |
PMCS | 0.308658985 |
Functional Information | |
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Coding potential | Y |
Potential coding position |
8951177-8950812(-) 8950842-8951206(-) |
Potential amino acid sequence |
MATNLESAYHLCQLAHPLLKSSGSGSVVFISSVSGVVAVSSGSVYAMTKGAMNQLAKNLACEWA KDNIRTNSVAPWYMKTSLVEDVNNVGTNFSKQTTEYSADDYSFIMATNLESAYHLCQLAHPLLK SSGSGSVVFISSVSGVVAVSSGSVYAMTKGAMNQLAKNLACEWAKDNIRTNSVAPWYMKTSLVE DVNNVGTNFSKQTTEYSADDYSFIMATNLESAYHLCQLAHPLLKSSGSGSVVFISSVSGVVAVS SGSVYAMTKGAMNQLAKNLACEWAKDNIRTNSVAPWYMKTSLVEDVNNVGTNFSKQTTEYSADD YSFIMATNLESAYHLCQLAHPLLKSSGSGSVVFISSVSGVVAVSSGSVYAMTKGAMNQLAKNLA CEWAKDNIRTNSVAPWYMKTSLVED(-) MVHEDFTCGRCEQRGNKLFKTNH*(-) |
Sponge-miRNAs | NA |
circRNA-miRNA-mRNA network | VISUALIZATION |
Potential function description | NA |
Other Information | |
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References | Chu et al., 2017 |