Detail information of Os10g0577000_circ_g.6


General Information
CircRNA Name Os10g0577000_circ_g.6
ID in PlantcircBase osa_circ_008169
Alias NA
Organism Oryza sativa
Position chr10: 22988227-22989536  JBrowse»
Reference genome IRGSP-1.0.38
Type   ue-circRNA
Identification method CIRCexplorer
Parent gene Os10g0577000
Parent gene annotation Conserved hypothetical protein. (Os10t0577000-01);NERD domain co
ntaining protein. (Os10t0577000-02)
Parent gene strand -
Alternative splicing Os10g0577000_circ_g.3 Os10g0577000_circ_g.4 Os10g0577000_circ_g.5
Support reads 1
Tissues root
Exon boundary   Yes-Yes
Splicing signals   CT-AC
Number of exons covered Os10t0577000-02:3
Os10t0577000-01:3
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   GTTGGTAAGGAGGACGAGGTCGACATGCTGGCGCTCGCCGGCGTCGGGGTCGGGGATGCGGAGG
CCGACGAAGCAGCGGGCGGAGTAGAGCTTCTCGAGCctgcagttgggatttggcagtacaatct
ttccagttatatgaccatcaggcagttttgctcccctcttctccaagtacgattgaagattggc
agccagtc
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CTGCAGTTGGGATTTGGCAGTACAATCTTTCCAGTTATATGACCATCAGGCAGTTTTGCTCCCC
TCTTCTCCAAGTACGATTGAAGATTGGCAGCCAGTCTATTGACTTGCAGTACCTACAGAACAAA
ATGTAAGAAACAATTAGCAAAACAAAATGCTCAACATGAGAAGGGCTATCAACTGTGCACGCTC
AAACACTCAAAATCCCAAATCAGATTCCGACCTGATATGCACATATGTTTATGGTTTGGAAGAC
AATAATAGCAAGGGAGTAAGGGACTAAGCAGCATAAAGTTTACTGACAGAAGAATTCAACATGA
AGAGTTTTCGTCACAAGACAGAATCTGTACACAGGTTAGAGTTTGTTGTAAGCCTCACTGACCA
ATGACAGTTAGCATCATTATAACTTACTTTGAAGTTGCTGTGGAAATGGAAATTTATAATCGGT
ACAGTTCCTTTTAATTATATAAACTTAAGGTTAGAAAAATATGCCATCAACTGTTATGTTTCTC
ACAACTATTCCAAATTTTCGGAACATAATAGTTATCATCTGCAACAAAGATCGAGAGAAAAGAA
ATTTGCCGAACGCTGAAATGTCTAAAAGAAGTTGCACCAAGCAAGATGACCATAATCTACCAAA
ATGTCAAACGGAGCCTAATTATGTATGTTGCCTTTGTTTTTTGTTTTTTCACCCAAGAGTATAG
CACCGAATGAAAACAAGAGTTGCAATATACATGGTGCCTTACTGCAAGAGGCAATGGCAATGGG
TCATAATGAGGCAGTGAAGGAAATAAATGACATACCGGGTTTGGGATAACACCATGCTTGTTCT
TCTTATCACTGGGGCAAGTCCAGTTGCCATCCTTATCGACCTCAACAAAACCAGAAATGTTGTG
GATAGCCACTACCATGACCTCCCTGTTGAGGAAAGAAGGTGAGAAGTTGGTTGCACAAAGCAAT
ATCCCCACAAGTAATTGAACATGGATGATACAAACGCACACATTAATGATCCATGAATTGTAGT
GCGGTATGCAAATTACAGTGAAGGCCAGTGTGGATTGGTCGATTCTAGTGTTGTGAACTTGTGA
GGTGCAGTAGAGAGGTGGTACAAATCCGTACATAGAATTGAAGAAATCTGTAATAAGCAGGGGA
TGTAGGGTAGAGGTACTAATGGGGCGGAAGACGGGGGGACGAAAGGAAGGACGTACCTGTTGGT
AAGGAGGACGAGGTCGACATGCTGGCGCTCGCCGGCGTCGGGGTCGGGGATGCGGAGGCCGACG
AAGCAGCGGGCGGAGTAGAGCTTCTCGAGC
Conservation Information
Conserved circRNAs osi_circ_008747
PMCS 0.116313575
Functional Information
Coding potential Y
Potential coding position 22988266-22989533(+)
22989139-22988229(-)
Potential amino acid sequence MTIRQFCSPLLQVRLKIGSQSIDLQYRVWDNTMLVLLITGASPVAILIDLNKTRNVVDSHYHDL
PVGKEDEVDMLALAGVGVGDAEADEAAGGVELLEPAVGIWQYNLSSYMTIRQFCSPLLQVRLKI
GSQSIDLQYRVWDNTMLVLLITGASPVAILIDLNKTRNVVDSHYHDLPVGKEDEVDMLALAGVG
VGDAEADEAAGGVELLEPAVGIWQYNLSSYMTIRQFCSPLLQVRLKIGSQSIDLQYRVWDNTML
VLLITGASPVAILIDLNKTRNVVDSHYHDLPVGKEDEVDMLALAGVGVGDAEADEAAGGVELLE
PAVGIWQYNLSSYMTIRQFCSPLLQVRLKIGSQSIDLQYRVWDNTMLVLLITGASPVAILIDLN
KTRNVVDSHYHDLPVGKEDEVDMLALAGVGVGDAEADEAAGGVELLE(+)
MVVAIHNISGFVEVDKDGNWTCPSDKKNKHGVIPNPVLQVNRLAANLQSYLEKRGAKLPDGHIT
GKIVLPNPNCRLEKLYSARCFVGLRIPDPDAGERQHVDLVLLTNREVMVVAIHNISGFVEVDKD
GNWTCPSDKKNKHGVIPNPVLQVNRLAANLQSYLEKRGAKLPDGHITGKIVLPNPNCRLEKLYS
ARCFVGLRIPDPDAGERQHVDLVLLTNREVMVVAIHNISGFVEVDKDGNWTCPSDKKNKHGVIP
NPVLQVNRLAANLQSYLEKRGAKLPDGHITGKIVLPNPNCRLEKLYSARCFVGLRIPDPDAGER
QHVDLVLLTNREVMVVAIHNISGFVEVDKDGNWTCPSDKKNKHGVIPNPVLQVNRLAANLQSYL
EKRGAKLPDGHITGKIVLPNPNC(-)
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017