Detail information of Os10g0577000_circ_g.4


General Information
CircRNA Name Os10g0577000_circ_g.4
ID in PlantcircBase osa_circ_008167
Alias NA
Organism Oryza sativa
Position chr10: 22987776-22987920  JBrowse»
Reference genome IRGSP-1.0.38
Type   i-circRNA
Identification method CIRCexplorer
Parent gene Os10g0577000
Parent gene annotation Conserved hypothetical protein. (Os10t0577000-01);NERD domain co
ntaining protein. (Os10t0577000-02)
Parent gene strand -
Alternative splicing Os10g0577000_circ_g.3 Os10g0577000_circ_g.5 Os10g0577000_circ_g.6
Support reads 1
Tissues root
Exon boundary   No-No
Splicing signals   CT-TA
Number of exons covered 0
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TTCGATTATCGGAATAAATTTTAGATTGCTTCTTGGCTGTTCGCTTTAAGTGTTCATGGCCATG
TTCTTTACtaaaagtttgacctcagcctctacatctttgtgcagaactaacaggtaacggatgt
tctgtgataggctgcga
Assembled circRNA sequence   Yes
Full-length trsnacripts Transcript length: 145
Transcript exons: 22987776-22987920
TAAAAGTTTGACCTCAGCCTCTACATCTTTGTGCAGAACTAACAGGTAACGGATGTTCTGTGAT
AGGCTGCGATTCGATTATCGGAATAAATTTTAGATTGCTTCTTGGCTGTTCGCTTTAAGTGTTC
ATGGCCATGTTCTTTAC

Genomic sequence TAAAAGTTTGACCTCAGCCTCTACATCTTTGTGCAGAACTAACAGGTAACGGATGTTCTGTGAT
AGGCTGCGATTCGATTATCGGAATAAATTTTAGATTGCTTCTTGGCTGTTCGCTTTAAGTGTTC
ATGGCCATGTTCTTTAC
Conservation Information
Conserved circRNAs osi_circ_002988
PMCS 0.19816092
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017