Detail information of Os10g0577000_circ_g.3


General Information
CircRNA Name Os10g0577000_circ_g.3
ID in PlantcircBase osa_circ_008166
Alias Os_ciR3622
Organism Oryza sativa
Position chr10: 22987722-22988008  JBrowse»
Reference genome IRGSP-1.0.38
Type   u-circRNA
Identification method find_circ
Parent gene Os10g0577000
Parent gene annotation Conserved hypothetical protein. (Os10t0577000-01);NERD domain co
ntaining protein. (Os10t0577000-02)
Parent gene strand -
Alternative splicing Os10g0577000_circ_g.4 Os10g0577000_circ_g.5 Os10g0577000_circ_g.6
Support reads 2
Tissues root
Exon boundary   No-No
Splicing signals   CT-AC
Number of exons covered Os10t0577000-02:2
Os10t0577000-01:2
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   CATGTTCTTTACCTGTCCCACATAGGCGACGTGCTGAGAATGAAATGTAGATTTTGGAGTAACG
AATCTTGCATGTCACCTTTGCTTCCACTGAATGCACcaagaatattcctgtcccctttgagttc
caacctacacaaggaaatatcaactataaaagtttgacctcagcctctacatctttgtgcagaa
ctaacagg
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CAAGAATATTCCTGTCCCCTTTGAGTTCCAACCTACACAAGGAAATATCAACTATAAAAGTTTG
ACCTCAGCCTCTACATCTTTGTGCAGAACTAACAGGTAACGGATGTTCTGTGATAGGCTGCGAT
TCGATTATCGGAATAAATTTTAGATTGCTTCTTGGCTGTTCGCTTTAAGTGTTCATGGCCATGT
TCTTTACCTGTCCCACATAGGCGACGTGCTGAGAATGAAATGTAGATTTTGGAGTAACGAATCT
TGCATGTCACCTTTGCTTCCACTGAATGCAC
Conservation Information
Conserved circRNAs NA
PMCS 0.16150119
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Ye et al., 2015