Detail information of Os10g0577000_circ_g.5


General Information
CircRNA Name Os10g0577000_circ_g.5
ID in PlantcircBase osa_circ_008168
Alias NA
Organism Oryza sativa
Position chr10: 22987921-22989536  JBrowse»
Reference genome IRGSP-1.0.38
Type   ue-circRNA
Identification method CIRCexplorer
Parent gene Os10g0577000
Parent gene annotation Conserved hypothetical protein. (Os10t0577000-01);NERD domain co
ntaining protein. (Os10t0577000-02)
Parent gene strand -
Alternative splicing Os10g0577000_circ_g.3 Os10g0577000_circ_g.4 Os10g0577000_circ_g.6
Support reads 1
Tissues shoot
Exon boundary   Yes-Yes
Splicing signals   CT-AC
Number of exons covered Os10t0577000-01:4
Os10t0577000-02:4
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   GTTGGTAAGGAGGACGAGGTCGACATGCTGGCGCTCGCCGGCGTCGGGGTCGGGGATGCGGAGG
CCGACGAAGCAGCGGGCGGAGTAGAGCTTCTCGAGCctgtcccacataggcgacgtgctgagaa
tgaaatgtagattttggagtaacgaatcttgcatgtcacctttgcttccactgaatgcaccttt
aatccatg
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CTGTCCCACATAGGCGACGTGCTGAGAATGAAATGTAGATTTTGGAGTAACGAATCTTGCATGT
CACCTTTGCTTCCACTGAATGCACCTTTAATCCATGTTGAAAGTCCACCTTTGGAATCTGCTTT
AAGATCTTTCCATTGATCGTACAAGATAACTTCTGGTTGAAGAGTGATGGCATAGGAAGGCCTG
GTGGAGCACTTGTTAGATAGTTAAAACTTAAAAAATAAAAAGACAAACAAAAAACAGAAAGAAA
AATTCTGCAAGTACGATCACAAAGAACATAGCTCAATATGAAGAACTAACCTGCAGTTGGGATT
TGGCAGTACAATCTTTCCAGTTATATGACCATCAGGCAGTTTTGCTCCCCTCTTCTCCAAGTAC
GATTGAAGATTGGCAGCCAGTCTATTGACTTGCAGTACCTACAGAACAAAATGTAAGAAACAAT
TAGCAAAACAAAATGCTCAACATGAGAAGGGCTATCAACTGTGCACGCTCAAACACTCAAAATC
CCAAATCAGATTCCGACCTGATATGCACATATGTTTATGGTTTGGAAGACAATAATAGCAAGGG
AGTAAGGGACTAAGCAGCATAAAGTTTACTGACAGAAGAATTCAACATGAAGAGTTTTCGTCAC
AAGACAGAATCTGTACACAGGTTAGAGTTTGTTGTAAGCCTCACTGACCAATGACAGTTAGCAT
CATTATAACTTACTTTGAAGTTGCTGTGGAAATGGAAATTTATAATCGGTACAGTTCCTTTTAA
TTATATAAACTTAAGGTTAGAAAAATATGCCATCAACTGTTATGTTTCTCACAACTATTCCAAA
TTTTCGGAACATAATAGTTATCATCTGCAACAAAGATCGAGAGAAAAGAAATTTGCCGAACGCT
GAAATGTCTAAAAGAAGTTGCACCAAGCAAGATGACCATAATCTACCAAAATGTCAAACGGAGC
CTAATTATGTATGTTGCCTTTGTTTTTTGTTTTTTCACCCAAGAGTATAGCACCGAATGAAAAC
AAGAGTTGCAATATACATGGTGCCTTACTGCAAGAGGCAATGGCAATGGGTCATAATGAGGCAG
TGAAGGAAATAAATGACATACCGGGTTTGGGATAACACCATGCTTGTTCTTCTTATCACTGGGG
CAAGTCCAGTTGCCATCCTTATCGACCTCAACAAAACCAGAAATGTTGTGGATAGCCACTACCA
TGACCTCCCTGTTGAGGAAAGAAGGTGAGAAGTTGGTTGCACAAAGCAATATCCCCACAAGTAA
TTGAACATGGATGATACAAACGCACACATTAATGATCCATGAATTGTAGTGCGGTATGCAAATT
ACAGTGAAGGCCAGTGTGGATTGGTCGATTCTAGTGTTGTGAACTTGTGAGGTGCAGTAGAGAG
GTGGTACAAATCCGTACATAGAATTGAAGAAATCTGTAATAAGCAGGGGATGTAGGGTAGAGGT
ACTAATGGGGCGGAAGACGGGGGGACGAAAGGAAGGACGTACCTGTTGGTAAGGAGGACGAGGT
CGACATGCTGGCGCTCGCCGGCGTCGGGGTCGGGGATGCGGAGGCCGACGAAGCAGCGGGCGGA
GTAGAGCTTCTCGAGC
Conservation Information
Conserved circRNAs NA
PMCS 0.13333619
Functional Information
Coding potential Y
Potential coding position 22988266-22987955(+)
22989139-22987923(-)
22988103-22989133(-)
Potential amino acid sequence MTIRQFCSPLLQVRLKIGSQSIDLQYRVWDNTMLVLLITGASPVAILIDLNKTRNVVDSHYHDL
PVGKEDEVDMLALAGVGVGDAEADEAAGGVELLEPVPHRRRAENEM*(+)
MVVAIHNISGFVEVDKDGNWTCPSDKKNKHGVIPNPVLQVNRLAANLQSYLEKRGAKLPDGHIT
GKIVLPNPNCRPSYAITLQPEVILYDQWKDLKADSKGGLSTWIKGAFSGSKGDMQDSLLQNLHF
ILSTSPMWDRLEKLYSARCFVGLRIPDPDAGERQHVDLVLLTNREVMVVAIHNISGFVEVDKDG
NWTCPSDKKNKHGVIPNPVLQVNRLAANLQSYLEKRGAKLPDGHITGKIVLPNPNCRPSYAITL
QPEVILYDQWKDLKADSKGGLSTWIKGAFSGSKGDMQDSLLQNLHFILSTSPMWDRLEKLYSAR
CFVGLRIPDPDAGERQHVDLVLLTNREVMVVAIHNISGFVEVDKDGNWTCPSDKKNKHGVIPNP
VLQVNRLAANLQSYLEKRGAKLPDGHITGKIVLPNPNCRPSYAITLQPEVILYDQWKDLKADSK
GGLSTWIKGAFSGSKGDMQDSLLQNLHFILSTSPMWDRLEKLYSARCFVGLRIPDPDAGERQHV
DLVLLTNREVMVVAIHNISGFVEVDKDGNWTCPSDKKNKHGVIPNPVLQVNRLAANLQSYLEKR
GAKLPDGHITGKIVLPNPNCRPSYAITLQPEVILYDQWKDLKADSKGGLSTWIKGAFSGSKGDM
QDSLLQNLHFILSTSPMWD(-)
MPSLFNQKLSCTINGKILKQIPKVDFQHGLKVHSVEAKVTCKIRYSKIYISFSARRLCGTGSRS
STPPAASSASASPTPTPASASMSTSSSLPTGRSW*(-)
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017