Detailed infomation of each circRNA
General Information | |
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CircRNA Name | Os10g0577000_circ_g.5 |
ID in PlantcircBase | osa_circ_008168 |
Alias | NA |
Organism | Oryza sativa |
Position | chr10: 22987921-22989536 JBrowse» |
Reference genome | IRGSP-1.0.38 |
Type | ue-circRNA |
Identification method | CIRCexplorer |
Parent gene | Os10g0577000 |
Parent gene annotation |
Conserved hypothetical protein. (Os10t0577000-01);NERD domain co ntaining protein. (Os10t0577000-02) |
Parent gene strand | - |
Alternative splicing | Os10g0577000_circ_g.3 Os10g0577000_circ_g.4 Os10g0577000_circ_g.6 |
Support reads | 1 |
Tissues | shoot |
Exon boundary | Yes-Yes |
Splicing signals | CT-AC |
Number of exons covered | Os10t0577000-01:4 Os10t0577000-02:4 |
Conservation Information | |
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Conserved circRNAs | NA |
PMCS | 0.13333619 |
Functional Information | |
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Coding potential | Y |
Potential coding position |
22988266-22987955(+) 22989139-22987923(-) 22988103-22989133(-) |
Potential amino acid sequence |
MTIRQFCSPLLQVRLKIGSQSIDLQYRVWDNTMLVLLITGASPVAILIDLNKTRNVVDSHYHDL PVGKEDEVDMLALAGVGVGDAEADEAAGGVELLEPVPHRRRAENEM*(+) MVVAIHNISGFVEVDKDGNWTCPSDKKNKHGVIPNPVLQVNRLAANLQSYLEKRGAKLPDGHIT GKIVLPNPNCRPSYAITLQPEVILYDQWKDLKADSKGGLSTWIKGAFSGSKGDMQDSLLQNLHF ILSTSPMWDRLEKLYSARCFVGLRIPDPDAGERQHVDLVLLTNREVMVVAIHNISGFVEVDKDG NWTCPSDKKNKHGVIPNPVLQVNRLAANLQSYLEKRGAKLPDGHITGKIVLPNPNCRPSYAITL QPEVILYDQWKDLKADSKGGLSTWIKGAFSGSKGDMQDSLLQNLHFILSTSPMWDRLEKLYSAR CFVGLRIPDPDAGERQHVDLVLLTNREVMVVAIHNISGFVEVDKDGNWTCPSDKKNKHGVIPNP VLQVNRLAANLQSYLEKRGAKLPDGHITGKIVLPNPNCRPSYAITLQPEVILYDQWKDLKADSK GGLSTWIKGAFSGSKGDMQDSLLQNLHFILSTSPMWDRLEKLYSARCFVGLRIPDPDAGERQHV DLVLLTNREVMVVAIHNISGFVEVDKDGNWTCPSDKKNKHGVIPNPVLQVNRLAANLQSYLEKR GAKLPDGHITGKIVLPNPNCRPSYAITLQPEVILYDQWKDLKADSKGGLSTWIKGAFSGSKGDM QDSLLQNLHFILSTSPMWD(-) MPSLFNQKLSCTINGKILKQIPKVDFQHGLKVHSVEAKVTCKIRYSKIYISFSARRLCGTGSRS STPPAASSASASPTPTPASASMSTSSSLPTGRSW*(-) |
Sponge-miRNAs | NA |
circRNA-miRNA-mRNA network | VISUALIZATION |
Potential function description | NA |
Other Information | |
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References | Chu et al., 2017 |