Detail information of BGIOSGA003293_circ_ag.2


General Information
CircRNA Name BGIOSGA003293_circ_ag.2
ID in PlantcircBase osi_circ_009010
Alias Chr11:5315929_5320224(MH63RS2), Chr11:5380629_5384925(ZS97RS2), Chr11:5315929_5320224(MH63RS2)
Organism Oryza sativa ssp. indica
Position chr1: 11310819-11315115  JBrowse»
Reference genome Oryza_indica.ASM465v1.42
Type   ag-circRNA
Identification method CIRI2, CIRI2, CIRI2
Parent gene NA
Parent gene annotation NA
Parent gene strand NA
Alternative splicing BGIOSGA003293_circ_ag.1 BGIOSGA003294_circ_ag.1 BGIOSGA003294_circ_ag.2 BGIOSGA003295_circ_g.1
Support reads NA
Tissues root, leaf, panicle
Exon boundary   NA-NA
Splicing signals   TA-AG
Number of exons covered NA
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   AATGAATACTGGTGTGTGCCCGATGATTTTAGTGCACTAACTTGCATTCTTCAACATGCACCGG
TTCTAGAGAATCTCATTCTTCAGATCTGTTCCAAGGggacctaaacatagaatgaaaatcaaag
gaaactgccattcaatggatagatcacttgtaatatcagcacaccttgagatagttgaaatcaa
atgcaaaa
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence GGACCTAAACATAGAATGAAAATCAAAGGAAACTGCCATTCAATGGATAGATCACTTGTAATAT
CAGCACACCTTGAGATAGTTGAAATCAAATGCAAAACGGTTGATAAGAGAGTACTCAAAGTTTT
GAAGTTTCTGTCTACTTTTAACATACGTAAACATTCTTCATTCTTTGTATATTTCTAAAATTTT
CCTTTACCTTAATATGCATGATATATAGCATGCTGTATTTAAGTTCTTTGGAGATGGATGCTAG
GAACATGGATTAATTGAGAAATGAAAGCATGCACTCCATTGGGTACTATTGGGAAGACGTTATC
TATTCTACTCTTTTGGCTAGTAGTATTCGAAAAAACCATTCTGATTTCTAAAATTTTCTTGCAT
CGCGTAACCGGTATGATAACATGTATGCCAGTATGTGTGTAATTATATCTTTCAATAATTTTAT
TTGATTTTCTTTCCCATCAGTTGCCATCTTGAATTCCAGTTTATTAGTTGCTCTTATAGCTCGC
ATGCCATTTGCCATGTATGCAAGTACCTCACAGACTTTGTTCTGCTATGATAATCAGTTTACCA
TTACCAGAGGTGCTGTATGCAAGTTTGCTGCACTAGTCATCCAGGTTGTATCATAGCAGCTAGT
AATTAATAATTGGGCAAGATTGCTTAGTTGTGTTGTTTGGCTAAGGTAATTTTTTTTTTGTCAC
ACTAGATTATATTTGTTATGTTGAGCTCACAACGCCTGGTGATTATAGCCTGGTGTCCAAAAAT
CTTGTTTACAAATTGCCATGGGTACTCACATAGTCCCTAGACCATGCAATTTTCTCTCTTGCCG
TGTGCTAGGTTGTAGAGAATCCAACTACTATGCATTATAGGATGCAACCATGTTGTAAAGGACC
AATGCTTGTTCAAGTGAGGGCATTTTATTTTGTTTCTTTTCTTTAAATGTAGTGGATACAATCA
GATTTTAGTCATGAAGAAGTAATGAAGTCTTTATGTCCATTTGGATTTTGAAGGATTGGTCCAA
TGGACTAAGTTTGTCAATGGATTTGAAGTTTTTGTTTTGAAGTGAAGTTTCAGGTGAGACCTCT
TGAAACTTACTGTGCTCTTCTTATTTGTTTTTGTGCAGTTTTTAGTTTTGAGGAAATCGAGATT
TTGGAAGAAGATGAAAATGACCAGGATGAAGAGGAGGAAGATGAGGATGAAGACGAGGACTCTT
ATGAAAACCCTTTTGAAGACGAAAATGAAGACTCTTACAAAGGCGAACATGAAGACGAAGACAA
TGAAGACGAAGACGAAGACGATGACGATGAAGACGAAGACGAAGACGAAGATGAAGAGTAAGAG
GAAGAGGAAGAGAAAAATGGTTGATGCACCACTGTTTTGATTTATTAAGAAGGTTAAGCTTCCA
TGTGCTCACTACCTGGGCTTCCGAGCAGTGGTGGACGCAACTTCAAAATATAGATGTGGCGGAG
AAAAGAGATGTTCACTCGATAAGAGCAATTAAACACAACACATATCGTATTTATAGTTCAATCG
CATATAACTGTCTCAATCATTGTTTGCGGCGTGCGTATGTTGTGAAGAAACGAACATCTATTGA
GTGCTTACACCTTCTTATACCTAATTTTGATGGTCCACAACTATTATAAGGGGTTAGGGGGGGT
TTGAGGGTGTGGGGCAATACGAGTCGTAGCTGGGACAGTCGACCTACCCTGCTTAATGGGTAGA
TCCGCCCCTGCTTCCGAGGGTTTTTTAATTCATAGGAAAAACATAAAAAGTTTAAGGATTTTAA
TTCTGTAGAAAAAATTCTGAAATGACCTTTAAAACAAATGGTTAAATCAATTTGTTTTATTTAT
GAAGACTTTGAAATTCTATGAAATGTACAATCATATAAAGACTTTGGAGGAAAGTTACCAAGAG
CTCTAACGTTTTTGGAATTTTAGTTTAAGTCTATCTCTCATCCATCTTGTATCTTATCCTGCTA
AACGATTATTCTTATATTTTTTTTATTTTGTAATCATCTGTCTTGTAATTTATTTTTATCTGTT
ATATTCAGATTCGTAGTAGTATGATATGTCACATCCTGTATTAGAGTGCATTTATATAGGGACA
GAGGAAATATATTTTAAATGAGCTCTAAACTGAGAGCCCCATCAATTAGCCTAATAAGTAAAAG
CAAAAGCCAAAATTTAAATTTTTAACTTGATTTTAAGATATTTCAACGTAATTTCTTTTTAGCA
TTGCCCTTTAAATCGCTATGAACCAATATATAAAAGTTTTATCTAGAAACTAATTTTTATTTCC
CAATAACTTATTTTGGCTTATTAAGCTGCGTTCGTTAGTCCAGGTTCGGAACTCTCCTGTCTCG
ATTTCCGTGCGTACGCTTTTGAAACTGTTAAACGGTGCGCTTTTTTTAAAAAAAGTTTCTGTAC
GAAAGTTGTTTAAAAAATCATATTGATTCTTTTTGAAAAAAATTAGCTAATACTTAATTAATCA
CGCGCTAATGGACCACTCCGTTTTCTGTGCTGGAGGGCAGCATTGGACTACCGAACACAACCTA
AGGCTATAAGCTTGATATGAAATAATTATTTTATATAAGTTGCTTAAAAATATTAGATAAATTT
ATTTGTAAGTTTATAATAATGAAAACTCAATTAATAATGCGGTAATATTTTTTCCCGCGTCCTA
ACTTTATTTTCATGCTAGTAACAAAAAAATAAAATAAAACTATATGCACAGCAAACTGACTCCC
AGGCTCTCCCCAGTCATGACTCACCTCAGTAGAGATAGAAACTGACTACAAACTCTCCGTCTTC
TCCACCCAGCACAGCATCCCACCCTTTCCTCCCCTCCGATCCAGAGCTCTCCGTCCGCTTCCCG
CGCTCGTGTCGCGCTTCTCCTCTCCAGCGTCGCGCCGCGCCATTGGCGTATCCGTATCCTTGCA
ACGCGGGCGCCGCGCGTTCCACTCTCTGGTCGGTCTCCGGTGGCCGGGGGGAGGCTGCCGGTGG
CGATGTGGGCAGCTTGGTCCTGACCCTTACAGCCCTCGCTCCTGGTGTTACTGTTACCTGAGCT
GTTCTTGCTACGCTGGGAGGGGAGGGGTGGCGCCGCGGCGACGCCCGCAACCTGTTCGACGGAA
TGTCTCCGCGGAAGATGCCCAAGGAATCGCCTGGCTCGACCGGGGGAGACCGCATAGGGGACCT
CCCGGATGAGGTGCTCCACCACGTGCTCTCCTTCCTACCGGCGCAGGAGGCTGTCCGGACGTGC
CTGCTGGCTCGGCGATGGCTCCACCTCTGGAAGTCCGCCACGGGGCTGCGCATTGGCGAGGACT
GCGACTATCTGGGAAGCGTGAAGACACAGAAGGAGTTTCTCGACCGTCTGCTGCTACTCCGTGA
TGGAGCCCCTCTCGACACGTGCGTGCTAATGTTCGATTATTACGGCGACATGGACATCGAGGAC
ACAGCTCGGGTGAACCTATGGTTCAGGCATGCTCTTATCCACAAGGCTCGGTTCCTCTGGCTCG
ACGTCGGATACTACCACTCATTTGTGATAGATGAGATGCCACTTGTCTCCCAGCACTTGACGAG
GCTACAGCTTCGAAATATAAGGGTAAACGACAGCTTCCTTAACTTCTCGAGCTGTCCAGCATTG
GAACATCTAGTGTTTCAGTCATGTAAATTTGGCTGTGCCAAGATCTCATCTAGATCTGCAAAAC
GTTTGAGCATAACCAATTCCTATTTCAGTGAGATATCTCGGGTACGTATCGCTATCCCGAGTCT
TGTTTCTCTGCAGCTGGATGGCTTCCATGACAGGGCTCCAGTGCTTGAGAGGATGCCATCATTA
GTTGATGCATTTGTTGGAGTCCTCAACTGGACTAAAGACTATTGCATTTGGTCTGACTCTGGGG
ATTGTGGTCATGAGAACTGCGAATCTTGTTACGGTATCAAGGACAACAATTGTGTGCTTTTGGA
AGGTTTATCGGAAGCTAAGACGTTGGGGCTGATAAGTGAACGTGGATCGGTATGCTTGCACTTC
CATCTTTAAGTTGTTTGTATTATCTCATTATTTATATTAATGTGCTTATATCCACTTGAACTCT
GTGGTTTTTGTTTATCTTCTTTTTTGCACTCCGCGCAGTTTATTTTGAAAAGGGATTTGAAATG
GTGCCCAACATTTACCAAGCTAAAGACTTTGTTACTCAATGAATACTGGTGTGTGCCCGATGAT
TTTAGTGCACTAACTTGCATTCTTCAACATGCACCGGTTCTAGAGAATCTCATTCTTCAGATCT
GTTCCAAGG
Conservation Information
Conserved circRNAs osa_circ_008779
PMCS
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs osa-miR816
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Zhou et al., 2021