Detail information of BGIOSGA012135_circ_g.3


General Information
CircRNA Name BGIOSGA012135_circ_g.3
ID in PlantcircBase osi_circ_004647
Alias 3:6790413|6791246
Organism Oryza sativa ssp. indica
Position chr3: 6790413-6791246  JBrowse»
Reference genome Oryza_indica.ASM465v1.42
Type   e-circRNA
Identification method find_circ
Parent gene BGIOSGA012135
Parent gene annotation NA
Parent gene strand +
Alternative splicing BGIOSGA012135_circ_g.1 BGIOSGA012135_circ_g.2
Support reads NA
Tissues leaf
Exon boundary   Yes-Yes
Splicing signals   GT-AG
Number of exons covered BGIOSGA012135-TA:3
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TTCGCCATACTCCTATACACACGTTTTGCTGGATATATAAGAAAAGGGACATGTCAGTTATCAC
TTTGCAAAGGATTCAGATGGTCTTCGGCCTAGGAAGattcccaacgctggagaaatcttactgc
gcagactcgagagacaccgaacgctcgcacaacactaattggatcactgaagtgcatttttcaa
accgagga
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence ATTCCCAACGCTGGAGAAATCTTACTGCGCAGACTCGAGAGACACCGAACGCTCGCACAACACT
AATTGGATCACTGAAGTGCATTTTTCAAACCGAGGAAGCAATAAACTTTGGATCTCTGAAGTGG
CAAAAATTAAAAAAAGAATTCGTTCTCTCAATCTCAGAAAGAGTCTTGGGCAAGCAAGGTTCTC
TAGCTCAACCGGATGTATACATGAACAACTACTCAAGGTTAGAAACCTACTTTTTTTTCCTCGA
AAACACATTAGAGAATTGTTCCTCATTTAATTAAGAAGAAAGATAAAGAAAACAAATACAAAAG
AGAGAATATAAACTGTCCTCCCCATAAATCACAACCACCCATCCATACACCAACTAAAAGGCGC
GACGCACAAGACCAGCTCTAGCTGTCCAGATTAAGCGACCTACATATAGAAGCTTATGGAGGAC
TTGGGCTCCAGCTAAGCACCACAAATTACTCTCATTTTTTACTGCTCTAATGCTTGTGCTAATT
TTGGTGCTAACTGCTACAGTTTTATTCGCTCAACTATATCCATGCTGGACTTTCTGCAGAATCA
GTTAAGTTTCCTTTAGTTTTTCTTCTGTATGTATGTACTCCTTAAGATTTTCAGAAAAGGCTAC
ATTAGTTAGACCTGTTGTCAATTAACCGTGTGCTTTTTGATTCTTCATGTAGTTGCCGTTCCCA
TGTTTGTTGAAGAAACTATCGGGACTATGTTTCGCCATACTCCTATACACACGTTTTGCTGGAT
ATATAAGAAAAGGGACATGTCAGTTATCACTTTGCAAAGGATTCAGATGGTCTTCGGCCTAGGA
AG
Conservation Information
Conserved circRNAs osa_circ_018568* osa_circ_018566
PMCS
Functional Information
Coding potential Y
Potential coding position 6790499-6791241(-)
6791198-6791243(+)
Potential amino acid sequence MHFSDPISVVRAFGVSRVCAVRFLQRWESS*(-)
MSVITLQRIQMVFGLGRFPTLEKSYCADSRDTERSHNTNWITEVHFSNRGSNKLWISEVAKIKK
RIRSLNLRKSLGQARFSSSTGCIHEQLLKFYSLNYIHAGLSAESKRDMSVITLQRIQMVFGLGR
FPTLEKSYCADSRDTERSHNTNWITEVHFSNRGSNKLWISEVAKIKKRIRSLNLRKSLGQARFS
SSTGCIHEQLLKFYSLNYIHAGLSAESKRDMSVITLQRIQMVFGLGRFPTLEKSYCADSRDTER
SHNTNWITEVHFSNRGSNKLWISEVAKIKKRIRSLNLRKSLGQARFSSSTGCIHEQLLKFYSLN
YIHAGLSAESKRDMSVITLQRIQMVFGLG(+)
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Huang et al., 2021