Detail information of BGIOSGA012135_circ_g.1


General Information
CircRNA Name BGIOSGA012135_circ_g.1
ID in PlantcircBase osi_circ_004646
Alias 3:6790122|6790641
Organism Oryza sativa ssp. indica
Position chr3: 6790122-6790641  JBrowse»
Reference genome Oryza_indica.ASM465v1.42
Type   ei-circRNA
Identification method find_circ
Parent gene BGIOSGA012135
Parent gene annotation NA
Parent gene strand +
Alternative splicing BGIOSGA012135_circ_g.2 BGIOSGA012135_circ_g.3
Support reads NA
Tissues leaf
Exon boundary   No-Yes
Splicing signals   GT-AG
Number of exons covered BGIOSGA012135-TA:1
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   AAAAATTAAAAAAAGAATTCGTTCTCTCAATCTCAGAAAGAGTCTTGGGCAAGCAAGGTTCTCT
AGCTCAACCGGATGTATACATGAACAACTACTCAAGtagagtgccgccgccggtgtactgcatg
cgcagtcgtgttcccaatttgctccacatgtgccttgctgccattgatgacctcgaccaccact
gtgagcta
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence TAGAGTGCCGCCGCCGGTGTACTGCATGCGCAGTCGTGTTCCCAATTTGCTCCACATGTGCCTT
GCTGCCATTGATGACCTCGACCACCACTGTGAGCTAGTAATTCAAAAGGCATCAGCAGTGCCGT
GGTGGTGGGTGGTGTGAGCTTGAAAAGGCAAAGCTCTTCGTTAGAGGTGGGCAGCATGCGTGGT
GGGGGATGGGACAGGGGTTCAGCAATCTTTGTCCTCTTCATTTAATTTCTTACTCCTAGCTGTT
AGTAGAAATTTTCTTTACCAAATTTGTTTTTGCAGATTCCCAACGCTGGAGAAATCTTACTGCG
CAGACTCGAGAGACACCGAACGCTCGCACAACACTAATTGGATCACTGAAGTGCATTTTTCAAA
CCGAGGAAGCAATAAACTTTGGATCTCTGAAGTGGCAAAAATTAAAAAAAGAATTCGTTCTCTC
AATCTCAGAAAGAGTCTTGGGCAAGCAAGGTTCTCTAGCTCAACCGGATGTATACATGAACAAC
TACTCAAG
Conservation Information
Conserved circRNAs NA
PMCS
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Huang et al., 2021