Detail information of Os03g0220700_circ_g.4


General Information
CircRNA Name Os03g0220700_circ_g.4
ID in PlantcircBase osa_circ_018566
Alias NA
Organism Oryza sativa
Position chr3: 6328343-6329176  JBrowse»
Reference genome IRGSP-1.0.38
Type   ui-circRNA
Identification method PcircRNA_finder
Parent gene Os03g0220700
Parent gene annotation Similar to (RAP Annotation release2) Peptidase. (Os03t0220700-01
);Conserved hypothetical protein. (Os03t0220700-02)
Parent gene strand +
Alternative splicing Os03g0220700_circ_g.5 Os03g0220700_circ_g.6
Support reads 2
Tissues seed
Exon boundary   No-No
Splicing signals   AG-GC
Number of exons covered Os03t0220700-01:1
Os03t0220700-02:3
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   GTTTCGCCATACTCCTATACACACGTTTTGCTGGATATATAAGAAAAGGGACATGTCAGTTATC
ACTTTGCAAAGGATTCAGATGGTCTTCGGCCTAGGAagattcccaacgctggagaaatcttact
gcgcagactcgagagacaccgaacgctcgcacaacactaattggatcactgaagtgcatttttc
aaaccgag
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence AGATTCCCAACGCTGGAGAAATCTTACTGCGCAGACTCGAGAGACACCGAACGCTCGCACAACA
CTAATTGGATCACTGAAGTGCATTTTTCAAACCGAGGAAGCAATAAACTTTGGATCTCTGAAGT
GGCAAAAATTAAAAAAAGAATTCGTTCTCTCAATCTCAGAAAGAGTCTTGGGCAAGCAAGGTTC
TCTAGCTCAACCGGATGTATACATGAACAACTACTCAAGGTTAGAAACCTACTTTTTTTTCCTC
GAAAACACATTAGAGAATTGTTCCTCATTTAATTAAGAAGAAAGATAAAGAAAACAAATACAAA
AGAGAGAATATAAACTGTCCTCCCCATAAATCACAACCACCCATCCATACACCAACTAAAAGGC
GCGACGCACAAGACCAGCTCTAGCTGTCCAGATTAAGCGACCTACATATAGAAGCTTATGGAGG
ACTTGGGCTCCAGCTAAGCACCACAAATTACTCTCATTTTTTACTGCTCTAATGCTTGTGCTAA
TTTTGGTGCTAACTGCTACAGTTTTATTCGCTCAACTATATCCATGCTGGACTTTCTGCAGAAT
CAGTTAAGTTTCCTTTAGTTTTTCTTCTGTATGTATGTACTCCTTAAGATTTTCAGAAAAGGCT
ACATTAGTTAGACCTGTTGTCAATTAACCGTGTGCTTTTTGATTCTTCATGTAGTTGCCGTTCC
CATGTTTGTTGAAGAAACTATCGGGACTATGTTTCGCCATACTCCTATACACACGTTTTGCTGG
ATATATAAGAAAAGGGACATGTCAGTTATCACTTTGCAAAGGATTCAGATGGTCTTCGGCCTAG
GA
Conservation Information
Conserved circRNAs osi_circ_004647 osi_circ_014068
PMCS 0.536292572
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017