Detail information of Os03g0220700_circ_g.6


General Information
CircRNA Name Os03g0220700_circ_g.6
ID in PlantcircBase osa_circ_018568
Alias Os03circ07398/Os_ciR232
Organism Oryza sativa
Position chr3: 6328345-6329178  JBrowse»
Reference genome IRGSP-1.0.38
Type   ue-circRNA
Identification method CIRCexplorer, CIRI, KNIFE, PcircRNA_finder, SMALT, Segemehl, circRNA_finder, circseq_cup, find_circ
Parent gene Os03g0220700
Parent gene annotation Similar to (RAP Annotation release2) Peptidase. (Os03t0220700-01
);Conserved hypothetical protein. (Os03t0220700-02)
Parent gene strand +
Alternative splicing Os03g0220700_circ_g.4 Os03g0220700_circ_g.5
Support reads 26/226/17/18
Tissues leaf and panicle/root/root/shoot, root, seed
Exon boundary   Yes-Yes
Splicing signals   GT-AG
Number of exons covered Os03t0220700-02:3
Os03t0220700-01:1
Experimental Information
Sanger sequencing for BSS   Yes
PCR primers for BSS    F: TCGCCATACTCCTATACACACG
R: ACATCCGGTTGAGCTAGAGAAC
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TTCGCCATACTCCTATACACACGTTTTGCTGGATATATAAGAAAAGGGACATGTCAGTTATCAC
TTTGCAAAGGATTCAGATGGTCTTCGGCCTAGGAAGattcccaacgctggagaaatcttactgc
gcagactcgagagacaccgaacgctcgcacaacactaattggatcactgaagtgcatttttcaa
accgagga
Assembled circRNA sequence   Yes
Full-length trsnacripts Transcript length: 165
Transcript exons: 6328345-6328472,6329142-6329178
ATTCCCAACGCTGGAGAAATCTTACTGCGCAGACTCGAGAGACACCGAACGCTCGCACAACACT
AATTGGATCACTGAAGTGCATTTTTCAAACCGAGGAAGCAATAAACTTTGGATCTCTGAAGTGG
CTTTGCAAAGGATTCAGATGGTCTTCGGCCTAGGAAG

Transcript length: 181
Transcript exons: 6328345-6328466,6329120-6329178
ATTCCCAACGCTGGAGAAATCTTACTGCGCAGACTCGAGAGACACCGAACGCTCGCACAACACT
AATTGGATCACTGAAGTGCATTTTTCAAACCGAGGAAGCAATAAACTTTGGATCTCTGAAAAGG
GACATGTCAGTTATCACTTTGCAAAGGATTCAGATGGTCTTCGGCCTAGGAAG

Transcript length: 185
Transcript exons: 6328345-6328442,6329092-6329178
ATTCCCAACGCTGGAGAAATCTTACTGCGCAGACTCGAGAGACACCGAACGCTCGCACAACACT
AATTGGATCACTGAAGTGCATTTTTCAAACCGAGTATACACACGTTTTGCTGGATATATAAGAA
AAGGGACATGTCAGTTATCACTTTGCAAAGGATTCAGATGGTCTTCGGCCTAGGAAG

Transcript length: 187
Transcript exons: 6328345-6328442,6329090-6329178
ATTCCCAACGCTGGAGAAATCTTACTGCGCAGACTCGAGAGACACCGAACGCTCGCACAACACT
AATTGGATCACTGAAGTGCATTTTTCAAACCGAGCCTATACACACGTTTTGCTGGATATATAAG
AAAAGGGACATGTCAGTTATCACTTTGCAAAGGATTCAGATGGTCTTCGGCCTAGGAAG

Transcript length: 187
Transcript exons: 6328345-6328472,6329120-6329178
ATTCCCAACGCTGGAGAAATCTTACTGCGCAGACTCGAGAGACACCGAACGCTCGCACAACACT
AATTGGATCACTGAAGTGCATTTTTCAAACCGAGGAAGCAATAAACTTTGGATCTCTGAAGTGG
AAAAGGGACATGTCAGTTATCACTTTGCAAAGGATTCAGATGGTCTTCGGCCTAGGAAG

Transcript length: 187
Transcript exons: 6328345-6328476,6329124-6329178
ATTCCCAACGCTGGAGAAATCTTACTGCGCAGACTCGAGAGACACCGAACGCTCGCACAACACT
AATTGGATCACTGAAGTGCATTTTTCAAACCGAGGAAGCAATAAACTTTGGATCTCTGAAGTGG
CAAAGGGACATGTCAGTTATCACTTTGCAAAGGATTCAGATGGTCTTCGGCCTAGGAAG

Transcript length: 189
Transcript exons: 6328345-6328421,6329067-6329178
ATTCCCAACGCTGGAGAAATCTTACTGCGCAGACTCGAGAGACACCGAACGCTCGCACAACACT
AATTGGATCACTGTCGGGACTATGTTTCGCCATACTCCTATACACACGTTTTGCTGGATATATA
AGAAAAGGGACATGTCAGTTATCACTTTGCAAAGGATTCAGATGGTCTTCGGCCTAGGAAG

Transcript length: 189
Transcript exons: 6328345-6328473,6329119-6329178
ATTCCCAACGCTGGAGAAATCTTACTGCGCAGACTCGAGAGACACCGAACGCTCGCACAACACT
AATTGGATCACTGAAGTGCATTTTTCAAACCGAGGAAGCAATAAACTTTGGATCTCTGAAGTGG
CGAAAAGGGACATGTCAGTTATCACTTTGCAAAGGATTCAGATGGTCTTCGGCCTAGGAAG

Transcript length: 194
Transcript exons: 6328345-6328517,6329158-6329178
ATTCCCAACGCTGGAGAAATCTTACTGCGCAGACTCGAGAGACACCGAACGCTCGCACAACACT
AATTGGATCACTGAAGTGCATTTTTCAAACCGAGGAAGCAATAAACTTTGGATCTCTGAAGTGG
CAAAAATTAAAAAAAGAATTCGTTCTCTCAATCTCAGAAAGAGTCGATGGTCTTCGGCCTAGGA
AG

Transcript length: 196
Transcript exons: 6328345-6328442,6329081-6329178
ATTCCCAACGCTGGAGAAATCTTACTGCGCAGACTCGAGAGACACCGAACGCTCGCACAACACT
AATTGGATCACTGAAGTGCATTTTTCAAACCGAGCGCCATACTCCTATACACACGTTTTGCTGG
ATATATAAGAAAAGGGACATGTCAGTTATCACTTTGCAAAGGATTCAGATGGTCTTCGGCCTAG
GAAG

Transcript length: 216
Transcript exons: 6328345-6328400,6328419-6328519,6329120-6329178
ATTCCCAACGCTGGAGAAATCTTACTGCGCAGACTCGAGAGACACCGAACGCTCGCCTGAAGTG
CATTTTTCAAACCGAGGAAGCAATAAACTTTGGATCTCTGAAGTGGCAAAAATTAAAAAAAGAA
TTCGTTCTCTCAATCTCAGAAAGAGTCTTAAAAGGGACATGTCAGTTATCACTTTGCAAAGGAT
TCAGATGGTCTTCGGCCTAGGAAG

Transcript length: 217
Transcript exons: 6328345-6328484,6329102-6329178
ATTCCCAACGCTGGAGAAATCTTACTGCGCAGACTCGAGAGACACCGAACGCTCGCACAACACT
AATTGGATCACTGAAGTGCATTTTTCAAACCGAGGAAGCAATAAACTTTGGATCTCTGAAGTGG
CAAAAATTAAAATTTTGCTGGATATATAAGAAAAGGGACATGTCAGTTATCACTTTGCAAAGGA
TTCAGATGGTCTTCGGCCTAGGAAG

Transcript length: 218
Transcript exons: 6328345-6328473,6329090-6329178
ATTCCCAACGCTGGAGAAATCTTACTGCGCAGACTCGAGAGACACCGAACGCTCGCACAACACT
AATTGGATCACTGAAGTGCATTTTTCAAACCGAGGAAGCAATAAACTTTGGATCTCTGAAGTGG
CCCTATACACACGTTTTGCTGGATATATAAGAAAAGGGACATGTCAGTTATCACTTTGCAAAGG
ATTCAGATGGTCTTCGGCCTAGGAAG

Transcript length: 223
Transcript exons: 6328345-6328442,6329054-6329178
ATTCCCAACGCTGGAGAAATCTTACTGCGCAGACTCGAGAGACACCGAACGCTCGCACAACACT
AATTGGATCACTGAAGTGCATTTTTCAAACCGAGGTTGAAGAAACTATCGGGACTATGTTTCGC
CATACTCCTATACACACGTTTTGCTGGATATATAAGAAAAGGGACATGTCAGTTATCACTTTGC
AAAGGATTCAGATGGTCTTCGGCCTAGGAAG

Transcript length: 228
Transcript exons: 6328345-6328466,6329073-6329178
ATTCCCAACGCTGGAGAAATCTTACTGCGCAGACTCGAGAGACACCGAACGCTCGCACAACACT
AATTGGATCACTGAAGTGCATTTTTCAAACCGAGGAAGCAATAAACTTTGGATCTCTGCTATGT
TTCGCCATACTCCTATACACACGTTTTGCTGGATATATAAGAAAAGGGACATGTCAGTTATCAC
TTTGCAAAGGATTCAGATGGTCTTCGGCCTAGGAAG

Transcript length: 229
Transcript exons: 6328345-6328443,6329047-6329176
ATTCCCAACGCTGGAGAAATCTTACTGCGCAGACTCGAGAGACACCGAACGCTCGCACAACACT
AATTGGATCACTGAAGTGCATTTTTCAAACCGAGGCATGTTTGTTGAAGAAACTATCGGGACTA
TGTTTCGCCATACTCCTATACACACGTTTTGCTGGATATATAAGAAAAGGGACATGTCAGTTAT
CACTTTGCAAAGGATTCAGATGGTCTTCGGCCTAGGA

Transcript length: 238
Transcript exons: 6328345-6328442,6329039-6329178
ATTCCCAACGCTGGAGAAATCTTACTGCGCAGACTCGAGAGACACCGAACGCTCGCACAACACT
AATTGGATCACTGAAGTGCATTTTTCAAACCGAGGCCGTTCCCATGTTTGTTGAAGAAACTATC
GGGACTATGTTTCGCCATACTCCTATACACACGTTTTGCTGGATATATAAGAAAAGGGACATGT
CAGTTATCACTTTGCAAAGGATTCAGATGGTCTTCGGCCTAGGAAG

Transcript length: 239
Transcript exons: 6328345-6328472,6329068-6329178
ATTCCCAACGCTGGAGAAATCTTACTGCGCAGACTCGAGAGACACCGAACGCTCGCACAACACT
AATTGGATCACTGAAGTGCATTTTTCAAACCGAGGAAGCAATAAACTTTGGATCTCTGAAGTGG
CGGGACTATGTTTCGCCATACTCCTATACACACGTTTTGCTGGATATATAAGAAAAGGGACATG
TCAGTTATCACTTTGCAAAGGATTCAGATGGTCTTCGGCCTAGGAAG

Transcript length: 241
Transcript exons: 6328345-6328442,6329036-6329178
ATTCCCAACGCTGGAGAAATCTTACTGCGCAGACTCGAGAGACACCGAACGCTCGCACAACACT
AATTGGATCACTGAAGTGCATTTTTCAAACCGAGGTTGCCGTTCCCATGTTTGTTGAAGAAACT
ATCGGGACTATGTTTCGCCATACTCCTATACACACGTTTTGCTGGATATATAAGAAAAGGGACA
TGTCAGTTATCACTTTGCAAAGGATTCAGATGGTCTTCGGCCTAGGAAG

Transcript length: 256
Transcript exons: 6328345-6328540,6329119-6329178
ATTCCCAACGCTGGAGAAATCTTACTGCGCAGACTCGAGAGACACCGAACGCTCGCACAACACT
AATTGGATCACTGAAGTGCATTTTTCAAACCGAGGAAGCAATAAACTTTGGATCTCTGAAGTGG
CAAAAATTAAAAAAAGAATTCGTTCTCTCAATCTCAGAAAGAGTCTTGGGCAAGCAAGGTTCTC
TAGCGAAAAGGGACATGTCAGTTATCACTTTGCAAAGGATTCAGATGGTCTTCGGCCTAGGAAG

Transcript length: 268
Transcript exons: 6328345-6328472,6329039-6329178
ATTCCCAACGCTGGAGAAATCTTACTGCGCAGACTCGAGAGACACCGAACGCTCGCACAACACT
AATTGGATCACTGAAGTGCATTTTTCAAACCGAGGAAGCAATAAACTTTGGATCTCTGAAGTGG
GCCGTTCCCATGTTTGTTGAAGAAACTATCGGGACTATGTTTCGCCATACTCCTATACACACGT
TTTGCTGGATATATAAGAAAAGGGACATGTCAGTTATCACTTTGCAAAGGATTCAGATGGTCTT
CGGCCTAGGAAG

Transcript length: 275
Transcript exons: 6328345-6328548,6329108-6329178
ATTCCCAACGCTGGAGAAATCTTACTGCGCAGACTCGAGAGACACCGAACGCTCGCACAACACT
AATTGGATCACTGAAGTGCATTTTTCAAACCGAGGAAGCAATAAACTTTGGATCTCTGAAGTGG
CAAAAATTAAAAAAAGAATTCGTTCTCTCAATCTCAGAAAGAGTCTTGGGCAAGCAAGGTTCTC
TAGCTCAACCGGTGGATATATAAGAAAAGGGACATGTCAGTTATCACTTTGCAAAGGATTCAGA
TGGTCTTCGGCCTAGGAAG

Transcript length: 278
Transcript exons: 6328345-6328521,6329078-6329178
ATTCCCAACGCTGGAGAAATCTTACTGCGCAGACTCGAGAGACACCGAACGCTCGCACAACACT
AATTGGATCACTGAAGTGCATTTTTCAAACCGAGGAAGCAATAAACTTTGGATCTCTGAAGTGG
CAAAAATTAAAAAAAGAATTCGTTCTCTCAATCTCAGAAAGAGTCTTGGTTTCGCCATACTCCT
ATACACACGTTTTGCTGGATATATAAGAAAAGGGACATGTCAGTTATCACTTTGCAAAGGATTC
AGATGGTCTTCGGCCTAGGAAG

Transcript length: 282
Transcript exons: 6328345-6328549,6329102-6329178
ATTCCCAACGCTGGAGAAATCTTACTGCGCAGACTCGAGAGACACCGAACGCTCGCACAACACT
AATTGGATCACTGAAGTGCATTTTTCAAACCGAGGAAGCAATAAACTTTGGATCTCTGAAGTGG
CAAAAATTAAAAAAAGAATTCGTTCTCTCAATCTCAGAAAGAGTCTTGGGCAAGCAAGGTTCTC
TAGCTCAACCGGATTTTGCTGGATATATAAGAAAAGGGACATGTCAGTTATCACTTTGCAAAGG
ATTCAGATGGTCTTCGGCCTAGGAAG

Transcript length: 283
Transcript exons: 6328345-6328522,6329074-6329178
ATTCCCAACGCTGGAGAAATCTTACTGCGCAGACTCGAGAGACACCGAACGCTCGCACAACACT
AATTGGATCACTGAAGTGCATTTTTCAAACCGAGGAAGCAATAAACTTTGGATCTCTGAAGTGG
CAAAAATTAAAAAAAGAATTCGTTCTCTCAATCTCAGAAAGAGTCTTGGGTATGTTTCGCCATA
CTCCTATACACACGTTTTGCTGGATATATAAGAAAAGGGACATGTCAGTTATCACTTTGCAAAG
GATTCAGATGGTCTTCGGCCTAGGAAG

Transcript length: 291
Transcript exons: 6328345-6328443,6328450-6328550,6329088-6329178
ATTCCCAACGCTGGAGAAATCTTACTGCGCAGACTCGAGAGACACCGAACGCTCGCACAACACT
AATTGGATCACTGAAGTGCATTTTTCAAACCGAGGTAAACTTTGGATCTCTGAAGTGGCAAAAA
TTAAAAAAAGAATTCGTTCTCTCAATCTCAGAAAGAGTCTTGGGCAAGCAAGGTTCTCTAGCTC
AACCGGATCTCCTATACACACGTTTTGCTGGATATATAAGAAAAGGGACATGTCAGTTATCACT
TTGCAAAGGATTCAGATGGTCTTCGGCCTAGGAAG

Transcript length: 291
Transcript exons: 6328345-6328522,6329066-6329178
ATTCCCAACGCTGGAGAAATCTTACTGCGCAGACTCGAGAGACACCGAACGCTCGCACAACACT
AATTGGATCACTGAAGTGCATTTTTCAAACCGAGGAAGCAATAAACTTTGGATCTCTGAAGTGG
CAAAAATTAAAAAAAGAATTCGTTCTCTCAATCTCAGAAAGAGTCTTGGGATCGGGACTATGTT
TCGCCATACTCCTATACACACGTTTTGCTGGATATATAAGAAAAGGGACATGTCAGTTATCACT
TTGCAAAGGATTCAGATGGTCTTCGGCCTAGGAAG

Transcript length: 309
Transcript exons: 6328345-6328513,6329039-6329178
ATTCCCAACGCTGGAGAAATCTTACTGCGCAGACTCGAGAGACACCGAACGCTCGCACAACACT
AATTGGATCACTGAAGTGCATTTTTCAAACCGAGGAAGCAATAAACTTTGGATCTCTGAAGTGG
CAAAAATTAAAAAAAGAATTCGTTCTCTCAATCTCAGAAAGGCCGTTCCCATGTTTGTTGAAGA
AACTATCGGGACTATGTTTCGCCATACTCCTATACACACGTTTTGCTGGATATATAAGAAAAGG
GACATGTCAGTTATCACTTTGCAAAGGATTCAGATGGTCTTCGGCCTAGGAAG

Transcript length: 316
Transcript exons: 6328345-6328542,6329061-6329178
ATTCCCAACGCTGGAGAAATCTTACTGCGCAGACTCGAGAGACACCGAACGCTCGCACAACACT
AATTGGATCACTGAAGTGCATTTTTCAAACCGAGGAAGCAATAAACTTTGGATCTCTGAAGTGG
CAAAAATTAAAAAAAGAATTCGTTCTCTCAATCTCAGAAAGAGTCTTGGGCAAGCAAGGTTCTC
TAGCTCAAACTATCGGGACTATGTTTCGCCATACTCCTATACACACGTTTTGCTGGATATATAA
GAAAAGGGACATGTCAGTTATCACTTTGCAAAGGATTCAGATGGTCTTCGGCCTAGGAAG

Transcript length: 329
Transcript exons: 6328345-6328573,6329079-6329178
ATTCCCAACGCTGGAGAAATCTTACTGCGCAGACTCGAGAGACACCGAACGCTCGCACAACACT
AATTGGATCACTGAAGTGCATTTTTCAAACCGAGGAAGCAATAAACTTTGGATCTCTGAAGTGG
CAAAAATTAAAAAAAGAATTCGTTCTCTCAATCTCAGAAAGAGTCTTGGGCAAGCAAGGTTCTC
TAGCTCAACCGGATGTATACATGAACAACTACTCAAGTTCGCCATACTCCTATACACACGTTTT
GCTGGATATATAAGAAAAGGGACATGTCAGTTATCACTTTGCAAAGGATTCAGATGGTCTTCGG
CCTAGGAAG

Transcript length: 343
Transcript exons: 6328345-6328547,6329039-6329178
ATTCCCAACGCTGGAGAAATCTTACTGCGCAGACTCGAGAGACACCGAACGCTCGCACAACACT
AATTGGATCACTGAAGTGCATTTTTCAAACCGAGGAAGCAATAAACTTTGGATCTCTGAAGTGG
CAAAAATTAAAAAAAGAATTCGTTCTCTCAATCTCAGAAAGAGTCTTGGGCAAGCAAGGTTCTC
TAGCTCAACCGGCCGTTCCCATGTTTGTTGAAGAAACTATCGGGACTATGTTTCGCCATACTCC
TATACACACGTTTTGCTGGATATATAAGAAAAGGGACATGTCAGTTATCACTTTGCAAAGGATT
CAGATGGTCTTCGGCCTAGGAAG

Transcript length: 416
Transcript exons: 6328345-6328573,6328876-6328920,6329037-6329178
ATTCCCAACGCTGGAGAAATCTTACTGCGCAGACTCGAGAGACACCGAACGCTCGCACAACACT
AATTGGATCACTGAAGTGCATTTTTCAAACCGAGGAAGCAATAAACTTTGGATCTCTGAAGTGG
CAAAAATTAAAAAAAGAATTCGTTCTCTCAATCTCAGAAAGAGTCTTGGGCAAGCAAGGTTCTC
TAGCTCAACCGGATGTATACATGAACAACTACTCAAGTTTTATTCGCTCAACTATATCCATGCT
GGACTTTCTGCAGAATCATTGCCGTTCCCATGTTTGTTGAAGAAACTATCGGGACTATGTTTCG
CCATACTCCTATACACACGTTTTGCTGGATATATAAGAAAAGGGACATGTCAGTTATCACTTTG
CAAAGGATTCAGATGGTCTTCGGCCTAGGAAG

Genomic sequence ATTCCCAACGCTGGAGAAATCTTACTGCGCAGACTCGAGAGACACCGAACGCTCGCACAACACT
AATTGGATCACTGAAGTGCATTTTTCAAACCGAGGAAGCAATAAACTTTGGATCTCTGAAGTGG
CAAAAATTAAAAAAAGAATTCGTTCTCTCAATCTCAGAAAGAGTCTTGGGCAAGCAAGGTTCTC
TAGCTCAACCGGATGTATACATGAACAACTACTCAAGGTTAGAAACCTACTTTTTTTTCCTCGA
AAACACATTAGAGAATTGTTCCTCATTTAATTAAGAAGAAAGATAAAGAAAACAAATACAAAAG
AGAGAATATAAACTGTCCTCCCCATAAATCACAACCACCCATCCATACACCAACTAAAAGGCGC
GACGCACAAGACCAGCTCTAGCTGTCCAGATTAAGCGACCTACATATAGAAGCTTATGGAGGAC
TTGGGCTCCAGCTAAGCACCACAAATTACTCTCATTTTTTACTGCTCTAATGCTTGTGCTAATT
TTGGTGCTAACTGCTACAGTTTTATTCGCTCAACTATATCCATGCTGGACTTTCTGCAGAATCA
GTTAAGTTTCCTTTAGTTTTTCTTCTGTATGTATGTACTCCTTAAGATTTTCAGAAAAGGCTAC
ATTAGTTAGACCTGTTGTCAATTAACCGTGTGCTTTTTGATTCTTCATGTAGTTGCCGTTCCCA
TGTTTGTTGAAGAAACTATCGGGACTATGTTTCGCCATACTCCTATACACACGTTTTGCTGGAT
ATATAAGAAAAGGGACATGTCAGTTATCACTTTGCAAAGGATTCAGATGGTCTTCGGCCTAGGA
AG
Conservation Information
Conserved circRNAs osi_circ_004647* osi_circ_014068
PMCS 0.45438781
Functional Information
Coding potential Y
Potential coding position 6329049-6329171(+)
6328431-6329173(-)
Potential amino acid sequence MFVEETIGTMFRHTPIHTFCWIYKKRDMSVITLQRIQMVFGLGRFPTLEKSYCADSRDTERSHN
TNWITEVHFSNRGSNKLWISEVAKIKKRIRSLNLRKSLGQARFSSSTGCIHEQLLKFYSLNYIH
AGLSAESLPFPCLLKKLSGLCFAILLYTRFAGYIRKGTCQLSLCKGFRWSSA*(+)
MHFSDPISVVRAFGVSRVCAVRFLQRWESS*(-)
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA