Detail information of Os10g0181333_circ_g.13


General Information
CircRNA Name Os10g0181333_circ_g.13
ID in PlantcircBase osa_circ_006334
Alias NA
Organism Oryza sativa
Position chr10: 5583924-5584768  JBrowse»
Reference genome IRGSP-1.0.38
Type   ie-circRNA
Identification method CIRCexplorer
Parent gene Os10g0181333
Parent gene annotation Hypothetical protein. (Os10t0181333-00)
Parent gene strand +
Alternative splicing Os10g0181333_circ_g.3 Os10g0181333_circ_g.4 Os10g0181333_circ_g.5 Os10g0181333_circ_g.6 Os10g0181333_circ_g.7 Os10g0181333_circ_g.8 Os10g0181333_circ_g.9 Os10g0181333_circ_g.10 Os10g0181333_circ_g.11 Os10g0181333_circ_g.12 Os10g0181333_circ_g.14
Support reads 1
Tissues shoot
Exon boundary   Yes-Yes
Splicing signals   CT-AC
Number of exons covered Os10t0181200-01:4
Os10t0181333-00:4
Os10t0181200-01:4
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   ATACTCCAGCCAATTAACTTTGCATCATCATGGTCATTCATTGCTTTCTTTTGTTTACTCACAG
GACCATCCCTTAAGCATGCAACTGGAACCAATCGCCctcaaacatagcatcaacttttccacac
ttggcacaagtcgatataagtgttgtgtaaagtttacaatcaggttttagcccagcttccttta
ggagcacc
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CTCAAACATAGCATCAACTTTTCCACACTTGGCACAAGTCGATATAAGTGTTGTGTAAAGTTTA
CAATCAGGTTTTAGCCCAGCTTCCTTTAGGAGCACCATAACTTGGAGAGCCCCTAAAAGGTAAA
AACAGTCATGTCTCATCAGATCTTAATCTAACAAATCACACAAGAAAGCTGCAGTTTTAAGTTC
AAGCAGCTACCATCAAAATCTTGCGAATTAGCGCACACAGATAAAAGCATATTGAAGGTACTCA
TTTTTGGGTTATTGATCAACTTGCAAAAACGAACAGCTTCCGGAACAGCCCTTTGCTTCTTACA
GGCATTCAGAAAGCTAGCATGGTGGATCTGAAAGTAGATGGAAATCAGGAAAGAGAAGAAGATA
TACACTAAAAAAAGGACTATTAGAACAGGTAACAACCTTATTCATATCAAGCAATCCCTTTTGC
TCCATGCTTTCCAATAGATCCACAGAGTCTTTCAATCTGACCATACCAAATTGAAGTATCAAGC
AAAAAATATTTATAGCACAAAGAGTGCAGCATATTTAATATGAAAATTCCATGTATGTAAGGGG
TGTTCTGGGAACAGATTAATAGCAATTATTATGTCCAACATTATACCTTCCATCAATTAACAAA
CTATTGTATCTCCTCAAGTAATCTGGCACGTCCTTTGTTCCCCTCAATCCAGCTCTATTTGCTG
AAGTAGAGTTTTCTGGATTCTCCTTGCTCAGTAAATTAGAAATACTCCAGCCAATTAACTTTGC
ATCATCATGGTCATTCATTGCTTTCTTTTGTTTACTCACAGGACCATCCCTTAAGCATGCAACT
GGAACCAATCGCC
Conservation Information
Conserved circRNAs NA
PMCS 0.180033314
Functional Information
Coding potential Y
Potential coding position 5584749-5583998(+)
5584711-5584744(-)
Potential amino acid sequence MQLEPIALKHSINFSTLGTSRYKCCVKFTIRF*(+)
MNDHDDAKLIGWSISNLLSKENPENSTSANRAGLRGTKDVPDYLRRYNSLLIDGRLKDSVDLLE
SMEQKGLLDMNKIHHASFLNACKKQRAVPEAVRFCKLINNPKMSTFNMLLSVCANSQDFDGALQ
VMVLLKEAGLKPDCKLYTTLISTCAKCGKVDAMFEGDWFQLHA*(-)
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017