Detail information of Os03g0227700_circ_g.5


General Information
CircRNA Name Os03g0227700_circ_g.5
ID in PlantcircBase osa_circ_041287
Alias NA
Organism Oryza sativa
Position chr3: 6738670-6738736  JBrowse»
Reference genome IRGSP-1.0.38
Type   u-circRNA
Identification method CIRI-long
Parent gene Os03g0227601
Parent gene annotation Hypothetical gene. (Os03t0227601-01)
Parent gene strand -
Alternative splicing Os03g0227700_circ_g.3 Os03g0227700_circ_g.4 Os03g0227700_circ_g.6 Os03g0227700_circ_g.7 Os03g0227700_circ_g.8 Os03g0227700_circ_g.9 Os03g0227700_circ_g.10 Os03g0227700_circ_g.11
Support reads NA
Tissues leaf
Exon boundary   No-No
Splicing signals   GT-AG
Number of exons covered Os03t0227700-01:1
Os03t0227601-01:1
Os03t0227700-01:1
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   CGGCGGGAGTACATCACCTTCATGAAGGGCGTGcatggacccgggggaggaagagacggagcgg
ctg
Assembled circRNA sequence   Yes
Full-length trsnacripts Transcript length: 67
Transcript exons: 6738670-6738736
CATGGACCCGGGGGAGGAAGAGACGGAGCGGCTGCGGCGGGAGTACATCACCTTCATGAAGGGC
GTG

Genomic sequence CATGGACCCGGGGGAGGAAGAGACGGAGCGGCTGCGGCGGGAGTACATCACCTTCATGAAGGGC
GTG
Conservation Information
Conserved circRNAs NA
PMCS 0.264924005
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References this study