Detail information of POPTR_0010s18980_circ_ag.2


General Information
CircRNA Name POPTR_0010s18980_circ_ag.2
ID in PlantcircBase pop_circ_002826
Alias Chr10:18026078-18030904
Organism Populus trichocarpa
Position chr10: 17047586-17052406  JBrowse»
Reference genome Populus trichocarpa genome v3.0
Type   ag-circRNA
Identification method CIRI2; circRNA_finder
Parent gene NA
Parent gene annotation NA
Parent gene strand NA
Alternative splicing POPTR_0010s18980_circ_igg.1 POPTR_0010s18980_circ_igg.2 POPTR_0010s18980_circ_ag.1 POPTR_0010s18980_circ_ag.3 POPTR_0010s18980_circ_ag.4 POPTR_0010s18980_circ_ag.5 POPTR_0010s18980_circ_ag.6
Support reads 4,2,11,3,2
Tissues leaf; cambium; xylem
Exon boundary   NA-NA
Splicing signals   CT-CA
Number of exons covered NA
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   ATAGCCGTAAGGAGCTGCTTAGAGCTAGAGGCTGATTTCATAAGACTTGTGGAAGACCTTCACT
GTAAGCCTGTAATCCCAGTAGGCCTACTGCTACCATcctgctcagtgtagcgagggcggggtgg
atgaaaaatgggttacgatcagtgagtggctagacaagcaaacccaaggatctgtggtttacat
agcgttcg
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CCTGCTCAGTGTAGCGAGGGCGGGGTGGATGAAAAATGGGTTACGATCAGTGAGTGGCTAGACA
AGCAAACCCAAGGATCTGTGGTTTACATAGCGTTCGGAAGCGAGTTAACAATAAATCAAGATGA
AATAACTGAATTGGCTCTGGGGTTAGAGTTATCGGGTCTGCCGTTCTTTTGGGCTTTGAGGAAC
CAGGATGACTCGGTCAGGTTACCAGATGGATTTGATGAACGAGTAAAAGGACGTGGAGTGGTGT
GGACGAGCTGGGCACCACAACTAAGGATTATGGCTCATGAATCGGTTGGGGGTTTTTTGACTCA
CTGCGGTTATAGCTCAGTTATAGAGGCACTCTCCTTTGGACTTGCTTTGATCATGTTGCCTTTC
GCTATAGACCAAGGATTAATCGCAAGGGTTTTTGAAGGGAAGAAGGTTGGGATAGAAGTGCCGA
GAGATGAGCAGGACGGGTCGTTTACGAGGAACTCGGTAGCTGAGTCACTCAGGTTGGTTATTGT
TGACAGGGAAGGATCCGCCTATAGAGAAAATGCCAAGCAGCAGATGGTAACATTATTTGGTGAT
AAGAGTATCAGCGATCGATGCATGGACCAATTTGTTGCCTTCCTACGAAGTCATAGAAAATTGC
CAGCAGTGATTAACAATGACCTGCCCACGCACTCGCCAAACTGACACGTGTCAATGCTTATGTG
TCGTGTCATCTGGTTCTTCACTAGGTTTTTTTAAAAAGAGTCCGGAGGTTTAGACTCTAGAGTG
CCTTTTTACTGTGTTTTTTTGTTTGTTTGTCTGTTTATGTAGTGTATAAATAGACCATTGAGTC
GCTTCCTGAAACTAAAATTTGTTTTCGAGAAATTTATGTATTATATTATATCTAAATATTTACT
TTATTAATTATTAACAAAAAAACTGGAACTTCAAAAAACACAAAGGTACTACAAAATTGAAAGC
CGTGATTGTCGGCAGGCATTTGCGAAGAGAGGGGCCATCAGCCATGGCCCGTAGGAAGGAGGAC
TGTGGCTAAGATTCCTTTAGGTTTTTTACCTGTCTCCCTCACTAATATTTTACTTTCTTCTGAA
AAAAGGAATTGCACATTAATCTCATATCTAATTTCCAGCAAATTCATGCTAATTAAAAATCATA
TTTTCATATTGAAACATTTTAACACAGAAAGATCCACCGACATTTGAAAATTTCCCTTTCTGTT
TATTACACAACTTTCTCTGGAAAATAAATAGTCAGGTTCACAGAAAGCTTGGGGAAATTTCTCA
CCGATTAGTCACTGATAGAAAGCCTAAACACGTGTTCTGCAATGATCTGCGCAGATCCGTTAAT
CTCCGGTGGGCGGTCATTCACGAGGAAATTTAATTACGAGCGATGGCATTATTGGCATGCCCTA
CTCAATTATTTTTTGAGAAGTGACATCTTAACTCCCTATGCTCCAAAGGAATACCTACCTACAA
GATCCCAAGCCAAGAGAAAATGGAACGAAGATGTCCACATCAAATATATATATATAAAGAAGGA
GGAGGAGGAGGAGGAGGAGGAGGAGGAACGAAGATGTGAAATGCAGGAGTCCAGATCAAATATA
TATATATATATATATATATATATATATATATATATATATATAAGATGGAGCCACGAAAAGCCAC
GTTAGGAAGGAAAATAAAACAAATCAGGAGTCAAGATCGAAGCCCACACTTGAGAGAAGATAAG
ATTATAATTGAGCTGCTGGCCTGAGGCCTGTGGGTGTGCATGCACCAGAGACAGTTGGATAGGA
GACAGACAGAGATCAGACATCTTGGTTTTGCATTAGGTCCCCATGTCAGTAAATTTCAAACAAT
TTAAGACAGAGACAGAGAATTTATTAAATTATTTTTTTTAATAATTTAAGACCATATAATTTTA
AGATTCAATAAATTTAATTTCCTTACTTTTCTCTGTGTCCGTCTCTAATTGTGAGCCAAAGCTG
TCGCAAATCATCCATTTTGGATAATAAATACAGTGTGCCACACATTAAGCCCTTAACTCAAAAA
ACCATGGGTACAAGATTATAACAGACCCACAGAGAGAAAAGCAAAAAATAAAATTAAAGCTGAG
ATTAATTCTCAAAAACATATATGATGAAGCATGAAATTGAGATTTGTTTTTTTAAAAAAATCAA
AACTAATCTATGTTAACCATTAAAACTTGTAACCTTAATCAAGAGGCCAAAACCGACCATATAG
AAGACAGATCTTGAAAACTACAAAGCAAAATTCTTAATAAAAAAAATATGTTTAGAGATGAAAT
TAAAAAAATATTTAAAAAAAACAATGAAAAAAAATTAAAGTAAACTCGAGATCAAGTTAACCCC
ACGACAAGGAAAGTGAAAAAAAAAAGCATGAAGACCAATATAAAAAAAAATTTGAAGGATAAAA
TTGAAAATAAATCAAATTTATAAACGAATCTAGAAAACAAATATCAACCCATATTAATTTTTGA
AACCTGTGACTTGGCCATAAGACTGTAGCTAACCTTATAGAAGTGAAAAAACAATGAAAAAAAA
TTATCAACAAAAAAAATATCAAGGAATTAAATTGGAACAAAAATACAATAAAAAAGCATTCTAA
GCAAAACAATACAATAATAAAAAATAGGAACCAATCTCGATATAAAAATAAATTTAAATCAAAT
ACTTAGAGATACAATTAAAAACAAAGTTTAATTAGTAAAAAAGCAAAAAAAATCAATACATTAA
AGACCGGGTTTGATATGAATATCAAATTAAAATAATGACAAAGATAAAAATAAAAATAAAAATT
AATTAATATAAGATAAAAAAACAAAAAAACGTAATAATAAAAAAATTTGATTCAAAGGATATCA
AAGTTGTTTTACTTTGTATAATGTAAAAAGACAAATACATCCCATTAATGTGTTAATGCCCAAT
AGACCCTTATTAAAAGACCAAAATAGTCTTTAGGTATTTGGTTTGCTTTTAGAAAGATAAAACA
GAAATGCTGGTGTATTTATTTTTTCAGTTAAAAAATGCTTTAAATTTAATTATATATATGTTTT
TAGATTGTTTTGATGATAAAAATAACTTTTAAAAAATAATAAAAATCTATATTAAAAACTTTAA
AAAACATCTATTAATACAATTTCAAAGAGTACGAGCCAGCTTCCCCATCAAATACTCGTTGTTA
TACATAGACAGCAAACAACATACAGAATTCACTTGCGGCTCTGTACTAGAGACAGCATCAGTCA
ATACCACCAGATCTGGAAGAATTTTTCATTCGCAGCCAAAACCTACCAATACTAATATAACTCG
TAGTCAATAGCATCTTGCAACGACGATCCCTCCGTATCTTGTGATCCTGCCCTGCAAAGAAAAG
GGGCAGTGATAAAATATAAATGTAAAATACAATACACACACACACGCACCAATCCATAATGATC
ATCTGCAATGCCTTGCACCGACCCGTTTGGTTGCATAACTAACCGTTGTTGCAAGTAAGGTACG
CTCGTTGACGAACGGCGACGACGTTTTATCTAAAATATACATGAAATATATTTATTTATTTAAT
CTTTCCTGTTTTTCTGAGAATGAAATGAATTGGCTTGATTATTTACACTGCAGATGAATGAACC
CTTTGTTTTCTGCAGAAGAGAAAAGGCCGAAGGGGGCATTTTGAATTTGGCACCCCTTAGTTTT
GGGCTTCTGGCGGTCCCATGTCCAGACCATCCTTGGGCCTTTTGTTTTTGGGCTACACGAAGGG
AAGTTGAGCGCTTATGCTGAAATCTTGTGCCCTTGTCTTCAGGGCTTCAAGCCGGCCATCCCTA
TGGCTAGGAGTCAGGAACTTTAATTATCGCGCCTAAATTTTAATTTGTTTTTTTTTAAGTTATA
AAACAGATTGTGAGAGTTTTTTAGAAAAATAAAATAATCTTTAAATAAAACGTGAAGCATTATC
TTTATCTGATTTAATAATAAATAAACGAATTTAATAGTATGGCTCATTTTTCATTAATTTATAA
TGGTTTAGATTCTTTTTCATATCTATGTAATAACCAGTTTTCTCATATGTATTCTTAAATTAGA
GAATTTCGAAGAGCTTTTATTTCTTATCCATATAATAGAATGGAGTGGTTGTTGTTATCGTCCT
CGTCGTCATGATGGGAGGATAGTAATATATCAGGTATTAATGAAGTCATCGATTTTCATGTAAA
AAAATTTACAATAATAATTCAATTTCGAAATAAAAAACTCTCATTCGCTAGCTATATATATATA
TACACATGGAATACAGGATAAGAAGCTAAAGCCACAAAAGCATTTAGATCAGGAAGTATCAATG
GATGAACCTCACGAGCTCCACATAGCCATGTTCCCATGGCTTGCTTTCGGTCATATAATCCCAT
ATCTAGAGATCGCCAAGCTAACATCCAACGTTTACCAACTATACCTCCAAATTTAACACCGCGA
ATCAATTTTTAATGCATGGACCATATCCTTCTCTGGACCATCATCCTCAGCTATGCTCAACGGC
GACGATCCAAGGACCGAACCGCAACACCTCACGGTCCCTCCAAAGTGGGTCACATTTCCCTCTA
AAGTGGCATTTCGCATCCATGAAGCTAAGCGGTTTATGGATCAAATTGAAGCGAACAGTTCAGG
TGTCACTGATGTATTTCGTTGGGGATCCGTGCTTGCTGGCTGTGATGTTATAGCCGTAAGGAGC
TGCTTAGAGCTAGAGGCTGATTTCATAAGACTTGTGGAAGACCTTCACTGTAAGCCTGTAATCC
CAGTAGGCCTACTGCTACCAT
Conservation Information
Conserved circRNAs NA
PMCS 0.093364587
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Song et al., 2020