Detail information of POPTR_0010s18980_circ_ag.4


General Information
CircRNA Name POPTR_0010s18980_circ_ag.4
ID in PlantcircBase pop_circ_002828
Alias Chr10:18026314|18031139
Organism Populus trichocarpa
Position chr10: 17047822-17052641  JBrowse»
Reference genome Populus trichocarpa genome v3.0
Type   ag-circRNA
Identification method find_circ
Parent gene NA
Parent gene annotation NA
Parent gene strand NA
Alternative splicing POPTR_0010s18980_circ_igg.1 POPTR_0010s18980_circ_igg.2 POPTR_0010s18980_circ_ag.1 POPTR_0010s18980_circ_ag.2 POPTR_0010s18980_circ_ag.3 POPTR_0010s18980_circ_ag.5 POPTR_0010s18980_circ_ag.6
Support reads NA
Tissues stem cambium
Exon boundary   NA-NA
Splicing signals   AA-GT
Number of exons covered NA
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   AATTGGCTCTGGGGTTAGAGTTATCAGGGCTGCCGTTCTTTTGGGCTTTCAGGAACCGGGATGA
CTCGGTCAGGTTACCAGATGGATTTGAGGAACGAGTaaaaggacgtggagtggtgtggacgagc
tgggcaccacaactaaggattatggctcatgaatcggttgggggttttttgactcactgcggtt
atagctca
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence AAAAGGACGTGGAGTGGTGTGGACGAGCTGGGCACCACAACTAAGGATTATGGCTCATGAATCG
GTTGGGGGTTTTTTGACTCACTGCGGTTATAGCTCAGTTATAGAGGCACTCTCCTTTGGACTTG
CTTTGATCATGTTGCCTTTCGCTATAGACCAAGGATTAATCGCAAGGGTTTTTGAAGGGAAGAA
GGTTGGGATAGAAGTGCCGAGAGATGAGCAGGACGGGTCGTTTACGAGGAACTCGGTAGCTGAG
TCACTCAGGTTGGTTATTGTTGACAGGGAAGGATCCGCCTATAGAGAAAATGCCAAGCAGCAGA
TGGTAACATTATTTGGTGATAAGAGTATCAGCGATCGATGCATGGACCAATTTGTTGCCTTCCT
ACGAAGTCATAGAAAATTGCCAGCAGTGATTAACAATGACCTGCCCACGCACTCGCCAAACTGA
CACGTGTCAATGCTTATGTGTCGTGTCATCTGGTTCTTCACTAGGTTTTTTTAAAAAGAGTCCG
GAGGTTTAGACTCTAGAGTGCCTTTTTACTGTGTTTTTTTGTTTGTTTGTCTGTTTATGTAGTG
TATAAATAGACCATTGAGTCGCTTCCTGAAACTAAAATTTGTTTTCGAGAAATTTATGTATTAT
ATTATATCTAAATATTTACTTTATTAATTATTAACAAAAAAACTGGAACTTCAAAAAACACAAA
GGTACTACAAAATTGAAAGCCGTGATTGTCGGCAGGCATTTGCGAAGAGAGGGGCCATCAGCCA
TGGCCCGTAGGAAGGAGGACTGTGGCTAAGATTCCTTTAGGTTTTTTACCTGTCTCCCTCACTA
ATATTTTACTTTCTTCTGAAAAAAGGAATTGCACATTAATCTCATATCTAATTTCCAGCAAATT
CATGCTAATTAAAAATCATATTTTCATATTGAAACATTTTAACACAGAAAGATCCACCGACATT
TGAAAATTTCCCTTTCTGTTTATTACACAACTTTCTCTGGAAAATAAATAGTCAGGTTCACAGA
AAGCTTGGGGAAATTTCTCACCGATTAGTCACTGATAGAAAGCCTAAACACGTGTTCTGCAATG
ATCTGCGCAGATCCGTTAATCTCCGGTGGGCGGTCATTCACGAGGAAATTTAATTACGAGCGAT
GGCATTATTGGCATGCCCTACTCAATTATTTTTTGAGAAGTGACATCTTAACTCCCTATGCTCC
AAAGGAATACCTACCTACAAGATCCCAAGCCAAGAGAAAATGGAACGAAGATGTCCACATCAAA
TATATATATATAAAGAAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAACGAAGATGTGAAATGC
AGGAGTCCAGATCAAATATATATATATATATATATATATATATATATATATATATATATATAAG
ATGGAGCCACGAAAAGCCACGTTAGGAAGGAAAATAAAACAAATCAGGAGTCAAGATCGAAGCC
CACACTTGAGAGAAGATAAGATTATAATTGAGCTGCTGGCCTGAGGCCTGTGGGTGTGCATGCA
CCAGAGACAGTTGGATAGGAGACAGACAGAGATCAGACATCTTGGTTTTGCATTAGGTCCCCAT
GTCAGTAAATTTCAAACAATTTAAGACAGAGACAGAGAATTTATTAAATTATTTTTTTTAATAA
TTTAAGACCATATAATTTTAAGATTCAATAAATTTAATTTCCTTACTTTTCTCTGTGTCCGTCT
CTAATTGTGAGCCAAAGCTGTCGCAAATCATCCATTTTGGATAATAAATACAGTGTGCCACACA
TTAAGCCCTTAACTCAAAAAACCATGGGTACAAGATTATAACAGACCCACAGAGAGAAAAGCAA
AAAATAAAATTAAAGCTGAGATTAATTCTCAAAAACATATATGATGAAGCATGAAATTGAGATT
TGTTTTTTTAAAAAAATCAAAACTAATCTATGTTAACCATTAAAACTTGTAACCTTAATCAAGA
GGCCAAAACCGACCATATAGAAGACAGATCTTGAAAACTACAAAGCAAAATTCTTAATAAAAAA
AATATGTTTAGAGATGAAATTAAAAAAATATTTAAAAAAAACAATGAAAAAAAATTAAAGTAAA
CTCGAGATCAAGTTAACCCCACGACAAGGAAAGTGAAAAAAAAAAGCATGAAGACCAATATAAA
AAAAAATTTGAAGGATAAAATTGAAAATAAATCAAATTTATAAACGAATCTAGAAAACAAATAT
CAACCCATATTAATTTTTGAAACCTGTGACTTGGCCATAAGACTGTAGCTAACCTTATAGAAGT
GAAAAAACAATGAAAAAAAATTATCAACAAAAAAAATATCAAGGAATTAAATTGGAACAAAAAT
ACAATAAAAAAGCATTCTAAGCAAAACAATACAATAATAAAAAATAGGAACCAATCTCGATATA
AAAATAAATTTAAATCAAATACTTAGAGATACAATTAAAAACAAAGTTTAATTAGTAAAAAAGC
AAAAAAAATCAATACATTAAAGACCGGGTTTGATATGAATATCAAATTAAAATAATGACAAAGA
TAAAAATAAAAATAAAAATTAATTAATATAAGATAAAAAAACAAAAAAACGTAATAATAAAAAA
ATTTGATTCAAAGGATATCAAAGTTGTTTTACTTTGTATAATGTAAAAAGACAAATACATCCCA
TTAATGTGTTAATGCCCAATAGACCCTTATTAAAAGACCAAAATAGTCTTTAGGTATTTGGTTT
GCTTTTAGAAAGATAAAACAGAAATGCTGGTGTATTTATTTTTTCAGTTAAAAAATGCTTTAAA
TTTAATTATATATATGTTTTTAGATTGTTTTGATGATAAAAATAACTTTTAAAAAATAATAAAA
ATCTATATTAAAAACTTTAAAAAACATCTATTAATACAATTTCAAAGAGTACGAGCCAGCTTCC
CCATCAAATACTCGTTGTTATACATAGACAGCAAACAACATACAGAATTCACTTGCGGCTCTGT
ACTAGAGACAGCATCAGTCAATACCACCAGATCTGGAAGAATTTTTCATTCGCAGCCAAAACCT
ACCAATACTAATATAACTCGTAGTCAATAGCATCTTGCAACGACGATCCCTCCGTATCTTGTGA
TCCTGCCCTGCAAAGAAAAGGGGCAGTGATAAAATATAAATGTAAAATACAATACACACACACA
CGCACCAATCCATAATGATCATCTGCAATGCCTTGCACCGACCCGTTTGGTTGCATAACTAACC
GTTGTTGCAAGTAAGGTACGCTCGTTGACGAACGGCGACGACGTTTTATCTAAAATATACATGA
AATATATTTATTTATTTAATCTTTCCTGTTTTTCTGAGAATGAAATGAATTGGCTTGATTATTT
ACACTGCAGATGAATGAACCCTTTGTTTTCTGCAGAAGAGAAAAGGCCGAAGGGGGCATTTTGA
ATTTGGCACCCCTTAGTTTTGGGCTTCTGGCGGTCCCATGTCCAGACCATCCTTGGGCCTTTTG
TTTTTGGGCTACACGAAGGGAAGTTGAGCGCTTATGCTGAAATCTTGTGCCCTTGTCTTCAGGG
CTTCAAGCCGGCCATCCCTATGGCTAGGAGTCAGGAACTTTAATTATCGCGCCTAAATTTTAAT
TTGTTTTTTTTTAAGTTATAAAACAGATTGTGAGAGTTTTTTAGAAAAATAAAATAATCTTTAA
ATAAAACGTGAAGCATTATCTTTATCTGATTTAATAATAAATAAACGAATTTAATAGTATGGCT
CATTTTTCATTAATTTATAATGGTTTAGATTCTTTTTCATATCTATGTAATAACCAGTTTTCTC
ATATGTATTCTTAAATTAGAGAATTTCGAAGAGCTTTTATTTCTTATCCATATAATAGAATGGA
GTGGTTGTTGTTATCGTCCTCGTCGTCATGATGGGAGGATAGTAATATATCAGGTATTAATGAA
GTCATCGATTTTCATGTAAAAAAATTTACAATAATAATTCAATTTCGAAATAAAAAACTCTCAT
TCGCTAGCTATATATATATATACACATGGAATACAGGATAAGAAGCTAAAGCCACAAAAGCATT
TAGATCAGGAAGTATCAATGGATGAACCTCACGAGCTCCACATAGCCATGTTCCCATGGCTTGC
TTTCGGTCATATAATCCCATATCTAGAGATCGCCAAGCTAACATCCAACGTTTACCAACTATAC
CTCCAAATTTAACACCGCGAATCAATTTTTAATGCATGGACCATATCCTTCTCTGGACCATCAT
CCTCAGCTATGCTCAACGGCGACGATCCAAGGACCGAACCGCAACACCTCACGGTCCCTCCAAA
GTGGGTCACATTTCCCTCTAAAGTGGCATTTCGCATCCATGAAGCTAAGCGGTTTATGGATCAA
ATTGAAGCGAACAGTTCAGGTGTCACTGATGTATTTCGTTGGGGATCCGTGCTTGCTGGCTGTG
ATGTTATAGCCGTAAGGAGCTGCTTAGAGCTAGAGGCTGATTTCATAAGACTTGTGGAAGACCT
TCACTGTAAGCCTGTAATCCCAGTAGGCCTACTGCTACCATCTACTCAGTCTCGCGAGGGCGGA
GTGGACGAAAAATGGGTTACGATCAGTGAGTGGCTAGACAAGCAAACCCAAGGATCTGTGGTTT
ACATAGCGTTCGGAAGCGAGTTAACAATAAATCAAAATGAAATAACTGAATTGGCTCTGGGGTT
AGAGTTATCAGGGCTGCCGTTCTTTTGGGCTTTCAGGAACCGGGATGACTCGGTCAGGTTACCA
GATGGATTTGAGGAACGAGT
Conservation Information
Conserved circRNAs NA
PMCS 0.780999239
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Zheng et al., 2020