Detail information of POPTR_0010s18980_circ_ag.6


General Information
CircRNA Name POPTR_0010s18980_circ_ag.6
ID in PlantcircBase pop_circ_002830
Alias Chr10:18026321|18031146
Organism Populus trichocarpa
Position chr10: 17047829-17052648  JBrowse»
Reference genome Populus trichocarpa genome v3.0
Type   ag-circRNA
Identification method find_circ
Parent gene NA
Parent gene annotation NA
Parent gene strand NA
Alternative splicing POPTR_0010s18980_circ_igg.1 POPTR_0010s18980_circ_igg.2 POPTR_0010s18980_circ_ag.1 POPTR_0010s18980_circ_ag.2 POPTR_0010s18980_circ_ag.3 POPTR_0010s18980_circ_ag.4 POPTR_0010s18980_circ_ag.5
Support reads NA
Tissues stem cambium
Exon boundary   NA-NA
Splicing signals   CG-GA
Number of exons covered NA
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TCTGGGGTTAGAGTTATCAGGGCTGCCGTTCTTTTGGGCTTTCAGGAACCGGGATGACTCGGTC
AGGTTACCAGATGGATTTGAGGAACGAGTAAAAGGAcgtggagtggtgtggacgagctgggcac
cacaactaaggattatggctcatgaatcggttgggggttttttgactcactgcggttatagctc
agttatag
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CGTGGAGTGGTGTGGACGAGCTGGGCACCACAACTAAGGATTATGGCTCATGAATCGGTTGGGG
GTTTTTTGACTCACTGCGGTTATAGCTCAGTTATAGAGGCACTCTCCTTTGGACTTGCTTTGAT
CATGTTGCCTTTCGCTATAGACCAAGGATTAATCGCAAGGGTTTTTGAAGGGAAGAAGGTTGGG
ATAGAAGTGCCGAGAGATGAGCAGGACGGGTCGTTTACGAGGAACTCGGTAGCTGAGTCACTCA
GGTTGGTTATTGTTGACAGGGAAGGATCCGCCTATAGAGAAAATGCCAAGCAGCAGATGGTAAC
ATTATTTGGTGATAAGAGTATCAGCGATCGATGCATGGACCAATTTGTTGCCTTCCTACGAAGT
CATAGAAAATTGCCAGCAGTGATTAACAATGACCTGCCCACGCACTCGCCAAACTGACACGTGT
CAATGCTTATGTGTCGTGTCATCTGGTTCTTCACTAGGTTTTTTTAAAAAGAGTCCGGAGGTTT
AGACTCTAGAGTGCCTTTTTACTGTGTTTTTTTGTTTGTTTGTCTGTTTATGTAGTGTATAAAT
AGACCATTGAGTCGCTTCCTGAAACTAAAATTTGTTTTCGAGAAATTTATGTATTATATTATAT
CTAAATATTTACTTTATTAATTATTAACAAAAAAACTGGAACTTCAAAAAACACAAAGGTACTA
CAAAATTGAAAGCCGTGATTGTCGGCAGGCATTTGCGAAGAGAGGGGCCATCAGCCATGGCCCG
TAGGAAGGAGGACTGTGGCTAAGATTCCTTTAGGTTTTTTACCTGTCTCCCTCACTAATATTTT
ACTTTCTTCTGAAAAAAGGAATTGCACATTAATCTCATATCTAATTTCCAGCAAATTCATGCTA
ATTAAAAATCATATTTTCATATTGAAACATTTTAACACAGAAAGATCCACCGACATTTGAAAAT
TTCCCTTTCTGTTTATTACACAACTTTCTCTGGAAAATAAATAGTCAGGTTCACAGAAAGCTTG
GGGAAATTTCTCACCGATTAGTCACTGATAGAAAGCCTAAACACGTGTTCTGCAATGATCTGCG
CAGATCCGTTAATCTCCGGTGGGCGGTCATTCACGAGGAAATTTAATTACGAGCGATGGCATTA
TTGGCATGCCCTACTCAATTATTTTTTGAGAAGTGACATCTTAACTCCCTATGCTCCAAAGGAA
TACCTACCTACAAGATCCCAAGCCAAGAGAAAATGGAACGAAGATGTCCACATCAAATATATAT
ATATAAAGAAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAACGAAGATGTGAAATGCAGGAGTC
CAGATCAAATATATATATATATATATATATATATATATATATATATATATATATAAGATGGAGC
CACGAAAAGCCACGTTAGGAAGGAAAATAAAACAAATCAGGAGTCAAGATCGAAGCCCACACTT
GAGAGAAGATAAGATTATAATTGAGCTGCTGGCCTGAGGCCTGTGGGTGTGCATGCACCAGAGA
CAGTTGGATAGGAGACAGACAGAGATCAGACATCTTGGTTTTGCATTAGGTCCCCATGTCAGTA
AATTTCAAACAATTTAAGACAGAGACAGAGAATTTATTAAATTATTTTTTTTAATAATTTAAGA
CCATATAATTTTAAGATTCAATAAATTTAATTTCCTTACTTTTCTCTGTGTCCGTCTCTAATTG
TGAGCCAAAGCTGTCGCAAATCATCCATTTTGGATAATAAATACAGTGTGCCACACATTAAGCC
CTTAACTCAAAAAACCATGGGTACAAGATTATAACAGACCCACAGAGAGAAAAGCAAAAAATAA
AATTAAAGCTGAGATTAATTCTCAAAAACATATATGATGAAGCATGAAATTGAGATTTGTTTTT
TTAAAAAAATCAAAACTAATCTATGTTAACCATTAAAACTTGTAACCTTAATCAAGAGGCCAAA
ACCGACCATATAGAAGACAGATCTTGAAAACTACAAAGCAAAATTCTTAATAAAAAAAATATGT
TTAGAGATGAAATTAAAAAAATATTTAAAAAAAACAATGAAAAAAAATTAAAGTAAACTCGAGA
TCAAGTTAACCCCACGACAAGGAAAGTGAAAAAAAAAAGCATGAAGACCAATATAAAAAAAAAT
TTGAAGGATAAAATTGAAAATAAATCAAATTTATAAACGAATCTAGAAAACAAATATCAACCCA
TATTAATTTTTGAAACCTGTGACTTGGCCATAAGACTGTAGCTAACCTTATAGAAGTGAAAAAA
CAATGAAAAAAAATTATCAACAAAAAAAATATCAAGGAATTAAATTGGAACAAAAATACAATAA
AAAAGCATTCTAAGCAAAACAATACAATAATAAAAAATAGGAACCAATCTCGATATAAAAATAA
ATTTAAATCAAATACTTAGAGATACAATTAAAAACAAAGTTTAATTAGTAAAAAAGCAAAAAAA
ATCAATACATTAAAGACCGGGTTTGATATGAATATCAAATTAAAATAATGACAAAGATAAAAAT
AAAAATAAAAATTAATTAATATAAGATAAAAAAACAAAAAAACGTAATAATAAAAAAATTTGAT
TCAAAGGATATCAAAGTTGTTTTACTTTGTATAATGTAAAAAGACAAATACATCCCATTAATGT
GTTAATGCCCAATAGACCCTTATTAAAAGACCAAAATAGTCTTTAGGTATTTGGTTTGCTTTTA
GAAAGATAAAACAGAAATGCTGGTGTATTTATTTTTTCAGTTAAAAAATGCTTTAAATTTAATT
ATATATATGTTTTTAGATTGTTTTGATGATAAAAATAACTTTTAAAAAATAATAAAAATCTATA
TTAAAAACTTTAAAAAACATCTATTAATACAATTTCAAAGAGTACGAGCCAGCTTCCCCATCAA
ATACTCGTTGTTATACATAGACAGCAAACAACATACAGAATTCACTTGCGGCTCTGTACTAGAG
ACAGCATCAGTCAATACCACCAGATCTGGAAGAATTTTTCATTCGCAGCCAAAACCTACCAATA
CTAATATAACTCGTAGTCAATAGCATCTTGCAACGACGATCCCTCCGTATCTTGTGATCCTGCC
CTGCAAAGAAAAGGGGCAGTGATAAAATATAAATGTAAAATACAATACACACACACACGCACCA
ATCCATAATGATCATCTGCAATGCCTTGCACCGACCCGTTTGGTTGCATAACTAACCGTTGTTG
CAAGTAAGGTACGCTCGTTGACGAACGGCGACGACGTTTTATCTAAAATATACATGAAATATAT
TTATTTATTTAATCTTTCCTGTTTTTCTGAGAATGAAATGAATTGGCTTGATTATTTACACTGC
AGATGAATGAACCCTTTGTTTTCTGCAGAAGAGAAAAGGCCGAAGGGGGCATTTTGAATTTGGC
ACCCCTTAGTTTTGGGCTTCTGGCGGTCCCATGTCCAGACCATCCTTGGGCCTTTTGTTTTTGG
GCTACACGAAGGGAAGTTGAGCGCTTATGCTGAAATCTTGTGCCCTTGTCTTCAGGGCTTCAAG
CCGGCCATCCCTATGGCTAGGAGTCAGGAACTTTAATTATCGCGCCTAAATTTTAATTTGTTTT
TTTTTAAGTTATAAAACAGATTGTGAGAGTTTTTTAGAAAAATAAAATAATCTTTAAATAAAAC
GTGAAGCATTATCTTTATCTGATTTAATAATAAATAAACGAATTTAATAGTATGGCTCATTTTT
CATTAATTTATAATGGTTTAGATTCTTTTTCATATCTATGTAATAACCAGTTTTCTCATATGTA
TTCTTAAATTAGAGAATTTCGAAGAGCTTTTATTTCTTATCCATATAATAGAATGGAGTGGTTG
TTGTTATCGTCCTCGTCGTCATGATGGGAGGATAGTAATATATCAGGTATTAATGAAGTCATCG
ATTTTCATGTAAAAAAATTTACAATAATAATTCAATTTCGAAATAAAAAACTCTCATTCGCTAG
CTATATATATATATACACATGGAATACAGGATAAGAAGCTAAAGCCACAAAAGCATTTAGATCA
GGAAGTATCAATGGATGAACCTCACGAGCTCCACATAGCCATGTTCCCATGGCTTGCTTTCGGT
CATATAATCCCATATCTAGAGATCGCCAAGCTAACATCCAACGTTTACCAACTATACCTCCAAA
TTTAACACCGCGAATCAATTTTTAATGCATGGACCATATCCTTCTCTGGACCATCATCCTCAGC
TATGCTCAACGGCGACGATCCAAGGACCGAACCGCAACACCTCACGGTCCCTCCAAAGTGGGTC
ACATTTCCCTCTAAAGTGGCATTTCGCATCCATGAAGCTAAGCGGTTTATGGATCAAATTGAAG
CGAACAGTTCAGGTGTCACTGATGTATTTCGTTGGGGATCCGTGCTTGCTGGCTGTGATGTTAT
AGCCGTAAGGAGCTGCTTAGAGCTAGAGGCTGATTTCATAAGACTTGTGGAAGACCTTCACTGT
AAGCCTGTAATCCCAGTAGGCCTACTGCTACCATCTACTCAGTCTCGCGAGGGCGGAGTGGACG
AAAAATGGGTTACGATCAGTGAGTGGCTAGACAAGCAAACCCAAGGATCTGTGGTTTACATAGC
GTTCGGAAGCGAGTTAACAATAAATCAAAATGAAATAACTGAATTGGCTCTGGGGTTAGAGTTA
TCAGGGCTGCCGTTCTTTTGGGCTTTCAGGAACCGGGATGACTCGGTCAGGTTACCAGATGGAT
TTGAGGAACGAGTAAAAGGA
Conservation Information
Conserved circRNAs NA
PMCS 0.468499239
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Zheng et al., 2020