Detail information of POPTR_0010s18980_circ_ag.5


General Information
CircRNA Name POPTR_0010s18980_circ_ag.5
ID in PlantcircBase pop_circ_002829
Alias Chr10:18026317|18031142
Organism Populus trichocarpa
Position chr10: 17047825-17052644  JBrowse»
Reference genome Populus trichocarpa genome v3.0
Type   ag-circRNA
Identification method find_circ
Parent gene NA
Parent gene annotation NA
Parent gene strand NA
Alternative splicing POPTR_0010s18980_circ_igg.1 POPTR_0010s18980_circ_igg.2 POPTR_0010s18980_circ_ag.1 POPTR_0010s18980_circ_ag.2 POPTR_0010s18980_circ_ag.3 POPTR_0010s18980_circ_ag.4 POPTR_0010s18980_circ_ag.6
Support reads NA
Tissues stem cambium
Exon boundary   NA-NA
Splicing signals   AG-AA
Number of exons covered NA
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TGGCTCTGGGGTTAGAGTTATCAGGGCTGCCGTTCTTTTGGGCTTTCAGGAACCGGGATGACTC
GGTCAGGTTACCAGATGGATTTGAGGAACGAGTAAAaggacgtggagtggtgtggacgagctgg
gcaccacaactaaggattatggctcatgaatcggttgggggttttttgactcactgcggttata
gctcagtt
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence AGGACGTGGAGTGGTGTGGACGAGCTGGGCACCACAACTAAGGATTATGGCTCATGAATCGGTT
GGGGGTTTTTTGACTCACTGCGGTTATAGCTCAGTTATAGAGGCACTCTCCTTTGGACTTGCTT
TGATCATGTTGCCTTTCGCTATAGACCAAGGATTAATCGCAAGGGTTTTTGAAGGGAAGAAGGT
TGGGATAGAAGTGCCGAGAGATGAGCAGGACGGGTCGTTTACGAGGAACTCGGTAGCTGAGTCA
CTCAGGTTGGTTATTGTTGACAGGGAAGGATCCGCCTATAGAGAAAATGCCAAGCAGCAGATGG
TAACATTATTTGGTGATAAGAGTATCAGCGATCGATGCATGGACCAATTTGTTGCCTTCCTACG
AAGTCATAGAAAATTGCCAGCAGTGATTAACAATGACCTGCCCACGCACTCGCCAAACTGACAC
GTGTCAATGCTTATGTGTCGTGTCATCTGGTTCTTCACTAGGTTTTTTTAAAAAGAGTCCGGAG
GTTTAGACTCTAGAGTGCCTTTTTACTGTGTTTTTTTGTTTGTTTGTCTGTTTATGTAGTGTAT
AAATAGACCATTGAGTCGCTTCCTGAAACTAAAATTTGTTTTCGAGAAATTTATGTATTATATT
ATATCTAAATATTTACTTTATTAATTATTAACAAAAAAACTGGAACTTCAAAAAACACAAAGGT
ACTACAAAATTGAAAGCCGTGATTGTCGGCAGGCATTTGCGAAGAGAGGGGCCATCAGCCATGG
CCCGTAGGAAGGAGGACTGTGGCTAAGATTCCTTTAGGTTTTTTACCTGTCTCCCTCACTAATA
TTTTACTTTCTTCTGAAAAAAGGAATTGCACATTAATCTCATATCTAATTTCCAGCAAATTCAT
GCTAATTAAAAATCATATTTTCATATTGAAACATTTTAACACAGAAAGATCCACCGACATTTGA
AAATTTCCCTTTCTGTTTATTACACAACTTTCTCTGGAAAATAAATAGTCAGGTTCACAGAAAG
CTTGGGGAAATTTCTCACCGATTAGTCACTGATAGAAAGCCTAAACACGTGTTCTGCAATGATC
TGCGCAGATCCGTTAATCTCCGGTGGGCGGTCATTCACGAGGAAATTTAATTACGAGCGATGGC
ATTATTGGCATGCCCTACTCAATTATTTTTTGAGAAGTGACATCTTAACTCCCTATGCTCCAAA
GGAATACCTACCTACAAGATCCCAAGCCAAGAGAAAATGGAACGAAGATGTCCACATCAAATAT
ATATATATAAAGAAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAACGAAGATGTGAAATGCAGG
AGTCCAGATCAAATATATATATATATATATATATATATATATATATATATATATATATAAGATG
GAGCCACGAAAAGCCACGTTAGGAAGGAAAATAAAACAAATCAGGAGTCAAGATCGAAGCCCAC
ACTTGAGAGAAGATAAGATTATAATTGAGCTGCTGGCCTGAGGCCTGTGGGTGTGCATGCACCA
GAGACAGTTGGATAGGAGACAGACAGAGATCAGACATCTTGGTTTTGCATTAGGTCCCCATGTC
AGTAAATTTCAAACAATTTAAGACAGAGACAGAGAATTTATTAAATTATTTTTTTTAATAATTT
AAGACCATATAATTTTAAGATTCAATAAATTTAATTTCCTTACTTTTCTCTGTGTCCGTCTCTA
ATTGTGAGCCAAAGCTGTCGCAAATCATCCATTTTGGATAATAAATACAGTGTGCCACACATTA
AGCCCTTAACTCAAAAAACCATGGGTACAAGATTATAACAGACCCACAGAGAGAAAAGCAAAAA
ATAAAATTAAAGCTGAGATTAATTCTCAAAAACATATATGATGAAGCATGAAATTGAGATTTGT
TTTTTTAAAAAAATCAAAACTAATCTATGTTAACCATTAAAACTTGTAACCTTAATCAAGAGGC
CAAAACCGACCATATAGAAGACAGATCTTGAAAACTACAAAGCAAAATTCTTAATAAAAAAAAT
ATGTTTAGAGATGAAATTAAAAAAATATTTAAAAAAAACAATGAAAAAAAATTAAAGTAAACTC
GAGATCAAGTTAACCCCACGACAAGGAAAGTGAAAAAAAAAAGCATGAAGACCAATATAAAAAA
AAATTTGAAGGATAAAATTGAAAATAAATCAAATTTATAAACGAATCTAGAAAACAAATATCAA
CCCATATTAATTTTTGAAACCTGTGACTTGGCCATAAGACTGTAGCTAACCTTATAGAAGTGAA
AAAACAATGAAAAAAAATTATCAACAAAAAAAATATCAAGGAATTAAATTGGAACAAAAATACA
ATAAAAAAGCATTCTAAGCAAAACAATACAATAATAAAAAATAGGAACCAATCTCGATATAAAA
ATAAATTTAAATCAAATACTTAGAGATACAATTAAAAACAAAGTTTAATTAGTAAAAAAGCAAA
AAAAATCAATACATTAAAGACCGGGTTTGATATGAATATCAAATTAAAATAATGACAAAGATAA
AAATAAAAATAAAAATTAATTAATATAAGATAAAAAAACAAAAAAACGTAATAATAAAAAAATT
TGATTCAAAGGATATCAAAGTTGTTTTACTTTGTATAATGTAAAAAGACAAATACATCCCATTA
ATGTGTTAATGCCCAATAGACCCTTATTAAAAGACCAAAATAGTCTTTAGGTATTTGGTTTGCT
TTTAGAAAGATAAAACAGAAATGCTGGTGTATTTATTTTTTCAGTTAAAAAATGCTTTAAATTT
AATTATATATATGTTTTTAGATTGTTTTGATGATAAAAATAACTTTTAAAAAATAATAAAAATC
TATATTAAAAACTTTAAAAAACATCTATTAATACAATTTCAAAGAGTACGAGCCAGCTTCCCCA
TCAAATACTCGTTGTTATACATAGACAGCAAACAACATACAGAATTCACTTGCGGCTCTGTACT
AGAGACAGCATCAGTCAATACCACCAGATCTGGAAGAATTTTTCATTCGCAGCCAAAACCTACC
AATACTAATATAACTCGTAGTCAATAGCATCTTGCAACGACGATCCCTCCGTATCTTGTGATCC
TGCCCTGCAAAGAAAAGGGGCAGTGATAAAATATAAATGTAAAATACAATACACACACACACGC
ACCAATCCATAATGATCATCTGCAATGCCTTGCACCGACCCGTTTGGTTGCATAACTAACCGTT
GTTGCAAGTAAGGTACGCTCGTTGACGAACGGCGACGACGTTTTATCTAAAATATACATGAAAT
ATATTTATTTATTTAATCTTTCCTGTTTTTCTGAGAATGAAATGAATTGGCTTGATTATTTACA
CTGCAGATGAATGAACCCTTTGTTTTCTGCAGAAGAGAAAAGGCCGAAGGGGGCATTTTGAATT
TGGCACCCCTTAGTTTTGGGCTTCTGGCGGTCCCATGTCCAGACCATCCTTGGGCCTTTTGTTT
TTGGGCTACACGAAGGGAAGTTGAGCGCTTATGCTGAAATCTTGTGCCCTTGTCTTCAGGGCTT
CAAGCCGGCCATCCCTATGGCTAGGAGTCAGGAACTTTAATTATCGCGCCTAAATTTTAATTTG
TTTTTTTTTAAGTTATAAAACAGATTGTGAGAGTTTTTTAGAAAAATAAAATAATCTTTAAATA
AAACGTGAAGCATTATCTTTATCTGATTTAATAATAAATAAACGAATTTAATAGTATGGCTCAT
TTTTCATTAATTTATAATGGTTTAGATTCTTTTTCATATCTATGTAATAACCAGTTTTCTCATA
TGTATTCTTAAATTAGAGAATTTCGAAGAGCTTTTATTTCTTATCCATATAATAGAATGGAGTG
GTTGTTGTTATCGTCCTCGTCGTCATGATGGGAGGATAGTAATATATCAGGTATTAATGAAGTC
ATCGATTTTCATGTAAAAAAATTTACAATAATAATTCAATTTCGAAATAAAAAACTCTCATTCG
CTAGCTATATATATATATACACATGGAATACAGGATAAGAAGCTAAAGCCACAAAAGCATTTAG
ATCAGGAAGTATCAATGGATGAACCTCACGAGCTCCACATAGCCATGTTCCCATGGCTTGCTTT
CGGTCATATAATCCCATATCTAGAGATCGCCAAGCTAACATCCAACGTTTACCAACTATACCTC
CAAATTTAACACCGCGAATCAATTTTTAATGCATGGACCATATCCTTCTCTGGACCATCATCCT
CAGCTATGCTCAACGGCGACGATCCAAGGACCGAACCGCAACACCTCACGGTCCCTCCAAAGTG
GGTCACATTTCCCTCTAAAGTGGCATTTCGCATCCATGAAGCTAAGCGGTTTATGGATCAAATT
GAAGCGAACAGTTCAGGTGTCACTGATGTATTTCGTTGGGGATCCGTGCTTGCTGGCTGTGATG
TTATAGCCGTAAGGAGCTGCTTAGAGCTAGAGGCTGATTTCATAAGACTTGTGGAAGACCTTCA
CTGTAAGCCTGTAATCCCAGTAGGCCTACTGCTACCATCTACTCAGTCTCGCGAGGGCGGAGTG
GACGAAAAATGGGTTACGATCAGTGAGTGGCTAGACAAGCAAACCCAAGGATCTGTGGTTTACA
TAGCGTTCGGAAGCGAGTTAACAATAAATCAAAATGAAATAACTGAATTGGCTCTGGGGTTAGA
GTTATCAGGGCTGCCGTTCTTTTGGGCTTTCAGGAACCGGGATGACTCGGTCAGGTTACCAGAT
GGATTTGAGGAACGAGTAAA
Conservation Information
Conserved circRNAs NA
PMCS 0.426832573
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Zheng et al., 2020