Plant Circular RNA Database

Detail information of Os03g0689100_circ_g.2

			
						 General Information
					
						CircRNA Name
						Os03g0689100_circ_g.2
					
						ID in PlantcircBase
						osa_circ_021044
					
						Alias
						NA
					
						Organism
						
							Oryza sativa						
					
						Position
						
							chr3: 27487924-27496115  JBrowse»						
					
						Reference genome
						
							IRGSP-1.0.38						
					
						Type  
						
							e-circRNA							
									
						Identification method
						CIRCexplorer
					
						Parent gene
						
							Os03g0689100						
					
						Parent gene annotation
						
							Histidine acid phosphatase family protein. (Os03t0689100-01);Sim
ilar to predicted protein. (Os03t0689100-02)
							
						Parent gene strand
						+
					
						Alternative splicing
						
							Os03g0689100_circ_g.1 Os03g0689100_circ_g.3 Os03g0689100_circ_g.4 Os03g0689100_circ_g.5 Os03g0689100_circ_g.6 Os03g0689100_circ_g.7 Os03g0689100_circ_g.8 Os03g0689100_circ_g.9 						
					
						Support reads
						1
					
						Tissues
						shoot
					
						Exon boundary  
						
							Yes-Yes							"Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.

						Splicing signals  
						
							GT-AG							The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.

						Number of exons covered
						Os03t0689100-01:15
Os03t0689100-02:1

General Information
CircRNA Name	Os03g0689100_circ_g.2
ID in PlantcircBase	osa_circ_021044
Alias	NA
Organism	Oryza sativa
Position	chr3: 27487924-27496115 JBrowse»
Reference genome	IRGSP-1.0.38
Type	e-circRNA
Identification method	CIRCexplorer
Parent gene	Os03g0689100
Parent gene annotation	Histidine acid phosphatase family protein. (Os03t0689100-01);Sim ilar to predicted protein. (Os03t0689100-02)
Parent gene strand	+
Alternative splicing	Os03g0689100_circ_g.1 Os03g0689100_circ_g.3 Os03g0689100_circ_g.4 Os03g0689100_circ_g.5 Os03g0689100_circ_g.6 Os03g0689100_circ_g.7 Os03g0689100_circ_g.8 Os03g0689100_circ_g.9
Support reads	1
Tissues	shoot
Exon boundary	Yes-Yes "Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.
Splicing signals	GT-AG The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.
Number of exons covered	Os03t0689100-01:15 Os03t0689100-02:1

			
						 Experimental Information
					
						Sanger sequencing for BSS  
						
							NA							Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".

						PCR primers for BSS   
						
							NA							PCR primers used in back-splicing site (BSS) validation.

						Sanger sequencing for FL   
						
							NA							Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.

						PCR primers for FL   
						
							NA							 PCR primers used in full-length (FL) sequence validation.

Experimental Information
Sanger sequencing for BSS	NA Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".
PCR primers for BSS	NA PCR primers used in back-splicing site (BSS) validation.
Sanger sequencing for FL	NA Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.
PCR primers for FL	NA PCR primers used in full-length (FL) sequence validation.

			
						 Sequences
					
						Splice junction sequence  
						
							AGTTCCAAAGCGCTGTGGTGATGGTGAAGAGGAACGACCAATTGAAGCACTGATGATTCTAAAA
TATGGCGGTGTACTCACTCATGCTGGGAGAAAGCAGgtgttctgctctcctatggagcagattc
ttgagaggctccgtgcatttggagaattcgaggtacgcgagatttttttttccaagccgtttct
ctttcttt

						Assembled circRNA sequence  
						
							NA
The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).

						Full-length trsnacripts
						
							NA						
					
						Genomic sequence
						
							TOO LONG (>5KB) TO SHOW GENOMIC SEQUENCE OF THIS CIRCULAR RNA. PLEASE FIND THE CORRESPONDING GENOMIC SEQUENCE AT DOWNLOAD SECTION.

Sequences
Splice junction sequence	AGTTCCAAAGCGCTGTGGTGATGGTGAAGAGGAACGACCAATTGAAGCACTGATGATTCTAAAA TATGGCGGTGTACTCACTCATGCTGGGAGAAAGCAGgtgttctgctctcctatggagcagattc ttgagaggctccgtgcatttggagaattcgaggtacgcgagatttttttttccaagccgtttct ctttcttt
Assembled circRNA sequence	NA The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).
Full-length trsnacripts	NA
Genomic sequence	TOO LONG (>5KB) TO SHOW GENOMIC SEQUENCE OF THIS CIRCULAR RNA. PLEASE FIND THE CORRESPONDING GENOMIC SEQUENCE AT DOWNLOAD SECTION.

			
						 Conservation Information
					
						Conserved circRNAs
						
							NA						
					
						PMCS
						0.112514527

Conservation Information
Conserved circRNAs	NA
PMCS	0.112514527

			
				
						 Functional Information
					

				
						Coding potential
						Y
					

						Potential coding position
						
							27487940-27496112(+)
27496082-27488989(+)
						
					

						Potential amino acid sequence
						
							MEQILERLRAFGEFEIIIFGDKVILEDPIEIWPKCDCLIAFYSSGFPLKKAEAYAALRRPFLVN
ELEPQHLLHDRRKVYEHLEKYGIPVPNYALVNREYPYQELDYFIEQEDFVEVHGKRFMKPFVEK
PVNGDDHRIMIYYPNSAGGGMKELFRKVGNRSSEFHPDVRRVRREGSYIYEEFMPTGGTDVKVY
TVGPGYAHAEARKSPVVDGVVMRNPDGKEVRYPVLLTPTEKQMSRDVCSAFRQMVCGFDLLRCD
GRSYVCDVNGWSFVKNSYKYYDDAACILRKIFLDAKAPHLSSTIPPSLPWKSNEPVQPTEGLTR
QGSGIIGTFGQSEELRSVIVVIRHGDRTPKQKVKLKVTEEKLLNLMLKYNGGKPRAETKLKSAV
QLQDLLDATRQLVPPTRSGRESDSDAEDLEHIEKLRQVKAVLEEGGHFSGIYRKVQLKPLKWIR
VPKRCGDGEEERPIEALMILKYGGVLTHAGRKQVFCSPMEQILERLRAFGEFEIIIFGDKVILE
DPIEIWPKCDCLIAFYSSGFPLKKAEAYAALRRPFLVNELEPQHLLHDRRKVYEHLEKYGIPVP
NYALVNREYPYQELDYFIEQEDFVEVHGKRFMKPFVEKPVNGDDHRIMIYYPNSAGGGMKELFR
KVGNRSSEFHPDVRRVRREGSYIYEEFMPTGGTDVKVYTVGPGYAHAEARKSPVVDGVVMRNPD
GKEVRYPVLLTPTEKQMSRDVCSAFRQMVCGFDLLRCDGRSYVCDVNGWSFVKNSYKYYDDAAC
ILRKIFLDAKAPHLSSTIPPSLPWKSNEPVQPTEGLTRQGSGIIGTFGQSEELRSVIVVIRHGD
RTPKQKVKLKVTEEKLLNLMLKYNGGKPRAETKLKSAVQLQDLLDATRQLVPPTRSGRESDSDA
EDLEHIEKLRQVKAVLEEGGHFSGIYRKVQLKPLKWIRVPKRCGDGEEERPIEALMILKYGGVL
THAGRKQVFCSPMEQILERLRAFGEFEIIIFGDKVILEDPIEIWPKCDCLIAFYSSGFPLKKAE
AYAALRRPFLVNELEPQHLLHDRRKVYEHLEKYGIPVPNYALVNREYPYQELDYFIEQEDFVEV
HGKRFMKPFVEKPVNGDDHRIMIYYPNSAGGGMKELFRKVGNRSSEFHPDVRRVRREGSYIYEE
FMPTGGTDVKVYTVGPGYAHAEARKSPVVDGVVMRNPDGKEVRYPVLLTPTEKQMSRDVCSAFR
QMVCGFDLLRCDGRSYVCDVNGWSFVKNSYKYYDDAACILRKIFLDAKAPHLSSTIPPSLPWKS
NEPVQPTEGLTRQGSGIIGTFGQSEELRSVIVVIRHGDRTPKQKVKLKVTEEKLLNLMLKYNGG
KPRAETKLKSAVQLQDLLDATRQLVPPTRSGRESDSDAEDLEHIEKLRQVKAVLEEGGHFSGIY
RKVQLKPLKWIRVPKRCGDGEEERPIEALMILKYGGVLTHAGRKQVFCSPMEQILERLRAFGEF
EIIIFGDKVILEDPIEIWPKCDCLIAFYSSGFPLKKAEAYAALRRPFLVNELEPQHLLHDRRKV
YEHLEKYGIPVPNYALVNREYPYQELDYFIEQEDFVEVHGKRFMKPFVEKPVNGDDHRIMIYYP
NSAGGGMKELFRKVGNRSSEFHPDVRRVRREGSYIYEEFMPTGGTDVKVYTVGPGYAHAEARKS
PVVDGVVMRNPDGKEVRYPVLLTPTEKQMSRDVCSAFRQMVCGFDLLRCDGRSYVCDVNGWSFV
KNSYKYYDDAACILRKIFLDAKAPHLSSTIPPSLPWKSNEPVQPTEGLTRQGSGIIGTFGQSEE
LRSVIVVIRHGDRTPKQKVKLKVTEEKLLNLMLKYNGGKPRAETKLKSAVQLQDLLDATRQLVP
PTRSGRESDSDAEDLEHIEKLRQVKAVLEEGGHFSGIYRKVQLKPLKWIRVPKRCGDGEEERPI
EALMILKYGGVLTHAGRKQ(+)
MAVYSLMLGESRCSALLWSRFLRGSVHLENSRL*(+)
						
					

						Sponge-miRNAs
						
							NA						
					

						circRNA-miRNA-mRNA network
						 VISUALIZATION
					

						Potential function description
						NA
					

			
		

Functional Information
Coding potential	Y
Potential coding position	27487940-27496112(+) 27496082-27488989(+)
Potential amino acid sequence	MEQILERLRAFGEFEIIIFGDKVILEDPIEIWPKCDCLIAFYSSGFPLKKAEAYAALRRPFLVN ELEPQHLLHDRRKVYEHLEKYGIPVPNYALVNREYPYQELDYFIEQEDFVEVHGKRFMKPFVEK PVNGDDHRIMIYYPNSAGGGMKELFRKVGNRSSEFHPDVRRVRREGSYIYEEFMPTGGTDVKVY TVGPGYAHAEARKSPVVDGVVMRNPDGKEVRYPVLLTPTEKQMSRDVCSAFRQMVCGFDLLRCD GRSYVCDVNGWSFVKNSYKYYDDAACILRKIFLDAKAPHLSSTIPPSLPWKSNEPVQPTEGLTR QGSGIIGTFGQSEELRSVIVVIRHGDRTPKQKVKLKVTEEKLLNLMLKYNGGKPRAETKLKSAV QLQDLLDATRQLVPPTRSGRESDSDAEDLEHIEKLRQVKAVLEEGGHFSGIYRKVQLKPLKWIR VPKRCGDGEEERPIEALMILKYGGVLTHAGRKQVFCSPMEQILERLRAFGEFEIIIFGDKVILE DPIEIWPKCDCLIAFYSSGFPLKKAEAYAALRRPFLVNELEPQHLLHDRRKVYEHLEKYGIPVP NYALVNREYPYQELDYFIEQEDFVEVHGKRFMKPFVEKPVNGDDHRIMIYYPNSAGGGMKELFR KVGNRSSEFHPDVRRVRREGSYIYEEFMPTGGTDVKVYTVGPGYAHAEARKSPVVDGVVMRNPD GKEVRYPVLLTPTEKQMSRDVCSAFRQMVCGFDLLRCDGRSYVCDVNGWSFVKNSYKYYDDAAC ILRKIFLDAKAPHLSSTIPPSLPWKSNEPVQPTEGLTRQGSGIIGTFGQSEELRSVIVVIRHGD RTPKQKVKLKVTEEKLLNLMLKYNGGKPRAETKLKSAVQLQDLLDATRQLVPPTRSGRESDSDA EDLEHIEKLRQVKAVLEEGGHFSGIYRKVQLKPLKWIRVPKRCGDGEEERPIEALMILKYGGVL THAGRKQVFCSPMEQILERLRAFGEFEIIIFGDKVILEDPIEIWPKCDCLIAFYSSGFPLKKAE AYAALRRPFLVNELEPQHLLHDRRKVYEHLEKYGIPVPNYALVNREYPYQELDYFIEQEDFVEV HGKRFMKPFVEKPVNGDDHRIMIYYPNSAGGGMKELFRKVGNRSSEFHPDVRRVRREGSYIYEE FMPTGGTDVKVYTVGPGYAHAEARKSPVVDGVVMRNPDGKEVRYPVLLTPTEKQMSRDVCSAFR QMVCGFDLLRCDGRSYVCDVNGWSFVKNSYKYYDDAACILRKIFLDAKAPHLSSTIPPSLPWKS NEPVQPTEGLTRQGSGIIGTFGQSEELRSVIVVIRHGDRTPKQKVKLKVTEEKLLNLMLKYNGG KPRAETKLKSAVQLQDLLDATRQLVPPTRSGRESDSDAEDLEHIEKLRQVKAVLEEGGHFSGIY RKVQLKPLKWIRVPKRCGDGEEERPIEALMILKYGGVLTHAGRKQVFCSPMEQILERLRAFGEF EIIIFGDKVILEDPIEIWPKCDCLIAFYSSGFPLKKAEAYAALRRPFLVNELEPQHLLHDRRKV YEHLEKYGIPVPNYALVNREYPYQELDYFIEQEDFVEVHGKRFMKPFVEKPVNGDDHRIMIYYP NSAGGGMKELFRKVGNRSSEFHPDVRRVRREGSYIYEEFMPTGGTDVKVYTVGPGYAHAEARKS PVVDGVVMRNPDGKEVRYPVLLTPTEKQMSRDVCSAFRQMVCGFDLLRCDGRSYVCDVNGWSFV KNSYKYYDDAACILRKIFLDAKAPHLSSTIPPSLPWKSNEPVQPTEGLTRQGSGIIGTFGQSEE LRSVIVVIRHGDRTPKQKVKLKVTEEKLLNLMLKYNGGKPRAETKLKSAVQLQDLLDATRQLVP PTRSGRESDSDAEDLEHIEKLRQVKAVLEEGGHFSGIYRKVQLKPLKWIRVPKRCGDGEEERPI EALMILKYGGVLTHAGRKQ(+) MAVYSLMLGESRCSALLWSRFLRGSVHLENSRL*(+)
Sponge-miRNAs	NA
circRNA-miRNA-mRNA network	VISUALIZATION
Potential function description	NA

			
						 Other Information
					
						References
						Chu et al., 2017

circRNA

Detail information of Os03g0689100_circ_g.2

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