Plant Circular RNA Database

Detail information of Os03g0689100_circ_g.9

			
						 General Information
					
						CircRNA Name
						Os03g0689100_circ_g.9
					
						ID in PlantcircBase
						osa_circ_021050
					
						Alias
						NA
					
						Organism
						
							Oryza sativa						
					
						Position
						
							chr3: 27496812-27499782  JBrowse»						
					
						Reference genome
						
							IRGSP-1.0.38						
					
						Type  
						
							e-circRNA							
									
						Identification method
						CIRCexplorer
					
						Parent gene
						
							Os03g0689100						
					
						Parent gene annotation
						
							Histidine acid phosphatase family protein. (Os03t0689100-01);Sim
ilar to predicted protein. (Os03t0689100-02)
							
						Parent gene strand
						+
					
						Alternative splicing
						
							Os03g0689100_circ_g.1 Os03g0689100_circ_g.2 Os03g0689100_circ_g.3 Os03g0689100_circ_g.4 Os03g0689100_circ_g.5 Os03g0689100_circ_g.6 Os03g0689100_circ_g.7 Os03g0689100_circ_g.8 						
					
						Support reads
						1
					
						Tissues
						shoot
					
						Exon boundary  
						
							Yes-Yes							"Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.

						Splicing signals  
						
							GT-AG							The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.

						Number of exons covered
						Os03t0689100-01:5
Os03t0689100-02:5

General Information
CircRNA Name	Os03g0689100_circ_g.9
ID in PlantcircBase	osa_circ_021050
Alias	NA
Organism	Oryza sativa
Position	chr3: 27496812-27499782 JBrowse»
Reference genome	IRGSP-1.0.38
Type	e-circRNA
Identification method	CIRCexplorer
Parent gene	Os03g0689100
Parent gene annotation	Histidine acid phosphatase family protein. (Os03t0689100-01);Sim ilar to predicted protein. (Os03t0689100-02)
Parent gene strand	+
Alternative splicing	Os03g0689100_circ_g.1 Os03g0689100_circ_g.2 Os03g0689100_circ_g.3 Os03g0689100_circ_g.4 Os03g0689100_circ_g.5 Os03g0689100_circ_g.6 Os03g0689100_circ_g.7 Os03g0689100_circ_g.8
Support reads	1
Tissues	shoot
Exon boundary	Yes-Yes "Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.
Splicing signals	GT-AG The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.
Number of exons covered	Os03t0689100-01:5 Os03t0689100-02:5

			
						 Experimental Information
					
						Sanger sequencing for BSS  
						
							NA							Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".

						PCR primers for BSS   
						
							NA							PCR primers used in back-splicing site (BSS) validation.

						Sanger sequencing for FL   
						
							NA							Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.

						PCR primers for FL   
						
							NA							 PCR primers used in full-length (FL) sequence validation.

Experimental Information
Sanger sequencing for BSS	NA Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".
PCR primers for BSS	NA PCR primers used in back-splicing site (BSS) validation.
Sanger sequencing for FL	NA Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.
PCR primers for FL	NA PCR primers used in full-length (FL) sequence validation.

			
				
						 Sequences
					

				
						Splice junction sequence  
						
							AAATGCTAAAGCAAAGAATACCAATGAACCAGTGGAGTTTCCATGGATGGTTGATGGTGCAGGA
TTGCCTGCAAATGCTTCGCAGCTTCTCCCTAAGATGgctgaagagttgggtaggtttttcagaa
acaatatatatccaggtaagattcacattgtgttgcttctgttattatgtaaagaacttttttt
atctttga

									
								

					

						Assembled circRNA sequence  
						
							NA
The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).

					

						Full-length trsnacripts
						
							NA						
					

						Genomic sequence
						
							GCTGAAGAGTTGGGTAGGTTTTTCAGAAACAATATATATCCAGGTAAGATTCACATTGTGTTGC
TTCTGTTATTATGTAAAGAACTTTTTTTATCTTTGATGTTCTTTTCAAGTGAAAAGAGAAATTT
ACACTGGAGATCCATAAACTTGAGCAGTAGTGGCCTAGGTCCTTGGCAGGCTTGTGATGTTGAA
CACCTGTTCCACTTAGTTTACTACAACAATTTTCTAATTAATTTGGAAAGGAAGTTCATGTAAA
AGGTGACTTAGCTGTCATAATAACATGTATGTGAGTAGTTGATGTGGCTTGTTGAAGTTACTGC
TTAGATGAAGTTCTTGATGCTAGCAAACAAGAAATTATAGAACACCCATTTTTTATCTTTGCAA
CTTATTTTAGCTAGTTAAATATCTGTACAATACCTACATCAATTATGTTTTTCAAAACCTTCAG
CTTACAATTGGCTCATTGACATAAACGACAGAATTGTCAAGTAGGGCCCTAGCACACCTGTCAT
TAATGGGCCTTCTAGTGAAAATTTCAGTTATTTTCTTTAGATATAAATGCAATAAGAACCTGGC
ATTATTATAGGCAATGATTGGCTAGGAAAAGTAACTTTACTGACATTACAGTCTGTTGCAGGTT
TCTTTTTTTTAAGAATAAAGTTGCATGTATTTAAGCTTTAAAACATTTTAAGTAATGTAATGTT
CTCAATGAAATGTGATCTCTGTCAGGCTGCCTTGTCTTGCATGATGACCTTGTATCATCTTGGT
TTTCTTTTCTCTTTTTTTTTTTTTTAAAAAAAGTTTATTTCTTGTACTCAATATTCTTTTCTTA
CTAGTATGTTATCCTGAATATAGGTGAAGGAACTGGTTTGCTTCGCCTTCATAGCACGTACAGA
CATGATTTAAAAATATACAGTTCAGATGAAGGCCGTGTGCAGGTATACTTTTGGTCTTCTTTTT
TTCAATTTATAGCCCCTCTGAAATAGTTCAATTTAGATAATCTGAAATAGTTTTATTTTTTTAA
TTTATTCTGTTTTTCCTTTCTATGTTGACATTGGTCATGCCAACAGGATTTAGGAAAATTTTAC
CTGTTGATAGGTAATTGTTGTTAGTTACCTTTCAACTACTTTTTATTTCCTGTGGTAATAAAGC
CCATACCTGCTTGTGTTTAACCTATCAAATACGGAACAATGGATGGGGGCAAACATAACTTAAG
CTGATGAAAATTGTTTGGTCTCAGTGATATATGATGTTTGTTCTTCTCAGATAGTGCTAAATCT
GCTTGATCATATCCATACCGTGTTCAGGATGGCTCGGAAGCAATAATCAGTCTAATATTAATCA
ATGCATATTCAAACTTTATTGGAAACTCTGTAATCTAATTGTACTCCTAGATAATTGCATTTTT
TCACTATTTCCCGGACTACTGGAAAACCAGGCAAAATATACTATTGTCATAACTAATAGCCTAA
CTTCAAATCTGTATATTCAAGCCCAGCACGCTCATTTTGGTACTTTCACTACTTTGATAAAATT
ACACCACTGTTATACACTGACAAATTGTTGTACTCGAACACATAAATACAGAAAAATATATTGC
AGAAATGATAGGATAAGTTATTCAGTAGGATAATCATAAAAGTGGATGCTATCACTGGGTATAG
TAGAGAGAAGATAGCAGCAAAATAGAAGTGGATCGTCTGCAACTTGTCTTATAGTATGTGGCTA
TGCGTTATTTTCTCTTGTAATGTTATTTATCATCTGAGTATATGTTCATGATGGTGTACTTGTC
AGATGTCAGCAGCAGCATTTGCCAAAGGCCTTCTTGATTTGGAAGGGCAACTAACACCTATACT
GGTCTGTTGCTTATAATTTAGATCCTTTTTGTTGCTTACTTGTGACTCCTGCCTCTTTCTCAAC
TCTGCCTTTGTACTAACTTCTCCAGGTCTCTCTAGTAAGTAAAGACTCATCTATGCTAGATGGA
TTGGAAGATGCTAGCATCGAGATGGATGAAGCAAAGGTTTGCTCTCATATTTAATAAACACCCC
GTATTTGTTTATGAACTCTGAAGTATTGAAGTCTCAAAAAGACACAAGCACATAGTATACTGCG
AAGAGGTTAATTTTAAGGTATATACTGTCTGGTGCTACTGTGGACTGGCACTGGTGCATCCTCT
TCAGCTTAGTTGGATTGATACTCCTCTTTGGTTAGGAGATTTCCATCGAGAGATCAATTAGAGA
TTGCCTGTGAGGATTTAAAGGATATAGCTAAGAGTATGGAAATTTTGGATGAGATTCTGTTATT
AGGAAATCCTGTCCTGATGACACTTATTCTGTCTTCCTGTTTCTCTCACTGCCTCTTGTCTTCT
TTGCTTTCCTCATCACAGCTCCTGGTCAGTGACGCTTGGGGCCAAAACCACCTACCCATGACAG
TTACTTGTTACAAGTCCCGTATAATTCATGTCATGTCCATACTTACCATGTCAACCAGTTCCAT
ATACGATACAATTAGATATGTATATGTTTTGGCATGTTTGCTTTAATCTCAGGAAGCTAGATCA
TTTACGAGTATATTACAAGTCTAGCCTGTATCTTGTATATGCCAGGACAACCGCCTGGCATAAC
TATGAGTTTTAACACTTGCTAGTGTTGAATCTAACCATTACTTTATTTTTCACCCCTCATAAAT
CTTTAGAAGCACCTGTGATGTTCCTTAGTTACTATAAGCTAATTCTTAATCCTTCTGTATTGTC
ATATCTTCACTTAATAACTAGGATCTCCTTGCTGCCTTCTATTCCTGTTCATCATATACTATTA
CCAAAAATTAAATAAATAAACATTTTCAGGCTAGATTGCATGAGATCATCATTACAAATGCTAA
AGCAAAGAATACCAATGAACCAGTGGAGTTTCCATGGATGGTTGATGGTGCAGGATTGCCTGCA
AATGCTTCGCAGCTTCTCCCTAAGATG
						
					

			
		

Sequences
Splice junction sequence	AAATGCTAAAGCAAAGAATACCAATGAACCAGTGGAGTTTCCATGGATGGTTGATGGTGCAGGA TTGCCTGCAAATGCTTCGCAGCTTCTCCCTAAGATGgctgaagagttgggtaggtttttcagaa acaatatatatccaggtaagattcacattgtgttgcttctgttattatgtaaagaacttttttt atctttga
Assembled circRNA sequence	NA The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).
Full-length trsnacripts	NA
Genomic sequence	GCTGAAGAGTTGGGTAGGTTTTTCAGAAACAATATATATCCAGGTAAGATTCACATTGTGTTGC TTCTGTTATTATGTAAAGAACTTTTTTTATCTTTGATGTTCTTTTCAAGTGAAAAGAGAAATTT ACACTGGAGATCCATAAACTTGAGCAGTAGTGGCCTAGGTCCTTGGCAGGCTTGTGATGTTGAA CACCTGTTCCACTTAGTTTACTACAACAATTTTCTAATTAATTTGGAAAGGAAGTTCATGTAAA AGGTGACTTAGCTGTCATAATAACATGTATGTGAGTAGTTGATGTGGCTTGTTGAAGTTACTGC TTAGATGAAGTTCTTGATGCTAGCAAACAAGAAATTATAGAACACCCATTTTTTATCTTTGCAA CTTATTTTAGCTAGTTAAATATCTGTACAATACCTACATCAATTATGTTTTTCAAAACCTTCAG CTTACAATTGGCTCATTGACATAAACGACAGAATTGTCAAGTAGGGCCCTAGCACACCTGTCAT TAATGGGCCTTCTAGTGAAAATTTCAGTTATTTTCTTTAGATATAAATGCAATAAGAACCTGGC ATTATTATAGGCAATGATTGGCTAGGAAAAGTAACTTTACTGACATTACAGTCTGTTGCAGGTT TCTTTTTTTTAAGAATAAAGTTGCATGTATTTAAGCTTTAAAACATTTTAAGTAATGTAATGTT CTCAATGAAATGTGATCTCTGTCAGGCTGCCTTGTCTTGCATGATGACCTTGTATCATCTTGGT TTTCTTTTCTCTTTTTTTTTTTTTTAAAAAAAGTTTATTTCTTGTACTCAATATTCTTTTCTTA CTAGTATGTTATCCTGAATATAGGTGAAGGAACTGGTTTGCTTCGCCTTCATAGCACGTACAGA CATGATTTAAAAATATACAGTTCAGATGAAGGCCGTGTGCAGGTATACTTTTGGTCTTCTTTTT TTCAATTTATAGCCCCTCTGAAATAGTTCAATTTAGATAATCTGAAATAGTTTTATTTTTTTAA TTTATTCTGTTTTTCCTTTCTATGTTGACATTGGTCATGCCAACAGGATTTAGGAAAATTTTAC CTGTTGATAGGTAATTGTTGTTAGTTACCTTTCAACTACTTTTTATTTCCTGTGGTAATAAAGC CCATACCTGCTTGTGTTTAACCTATCAAATACGGAACAATGGATGGGGGCAAACATAACTTAAG CTGATGAAAATTGTTTGGTCTCAGTGATATATGATGTTTGTTCTTCTCAGATAGTGCTAAATCT GCTTGATCATATCCATACCGTGTTCAGGATGGCTCGGAAGCAATAATCAGTCTAATATTAATCA ATGCATATTCAAACTTTATTGGAAACTCTGTAATCTAATTGTACTCCTAGATAATTGCATTTTT TCACTATTTCCCGGACTACTGGAAAACCAGGCAAAATATACTATTGTCATAACTAATAGCCTAA CTTCAAATCTGTATATTCAAGCCCAGCACGCTCATTTTGGTACTTTCACTACTTTGATAAAATT ACACCACTGTTATACACTGACAAATTGTTGTACTCGAACACATAAATACAGAAAAATATATTGC AGAAATGATAGGATAAGTTATTCAGTAGGATAATCATAAAAGTGGATGCTATCACTGGGTATAG TAGAGAGAAGATAGCAGCAAAATAGAAGTGGATCGTCTGCAACTTGTCTTATAGTATGTGGCTA TGCGTTATTTTCTCTTGTAATGTTATTTATCATCTGAGTATATGTTCATGATGGTGTACTTGTC AGATGTCAGCAGCAGCATTTGCCAAAGGCCTTCTTGATTTGGAAGGGCAACTAACACCTATACT GGTCTGTTGCTTATAATTTAGATCCTTTTTGTTGCTTACTTGTGACTCCTGCCTCTTTCTCAAC TCTGCCTTTGTACTAACTTCTCCAGGTCTCTCTAGTAAGTAAAGACTCATCTATGCTAGATGGA TTGGAAGATGCTAGCATCGAGATGGATGAAGCAAAGGTTTGCTCTCATATTTAATAAACACCCC GTATTTGTTTATGAACTCTGAAGTATTGAAGTCTCAAAAAGACACAAGCACATAGTATACTGCG AAGAGGTTAATTTTAAGGTATATACTGTCTGGTGCTACTGTGGACTGGCACTGGTGCATCCTCT TCAGCTTAGTTGGATTGATACTCCTCTTTGGTTAGGAGATTTCCATCGAGAGATCAATTAGAGA TTGCCTGTGAGGATTTAAAGGATATAGCTAAGAGTATGGAAATTTTGGATGAGATTCTGTTATT AGGAAATCCTGTCCTGATGACACTTATTCTGTCTTCCTGTTTCTCTCACTGCCTCTTGTCTTCT TTGCTTTCCTCATCACAGCTCCTGGTCAGTGACGCTTGGGGCCAAAACCACCTACCCATGACAG TTACTTGTTACAAGTCCCGTATAATTCATGTCATGTCCATACTTACCATGTCAACCAGTTCCAT ATACGATACAATTAGATATGTATATGTTTTGGCATGTTTGCTTTAATCTCAGGAAGCTAGATCA TTTACGAGTATATTACAAGTCTAGCCTGTATCTTGTATATGCCAGGACAACCGCCTGGCATAAC TATGAGTTTTAACACTTGCTAGTGTTGAATCTAACCATTACTTTATTTTTCACCCCTCATAAAT CTTTAGAAGCACCTGTGATGTTCCTTAGTTACTATAAGCTAATTCTTAATCCTTCTGTATTGTC ATATCTTCACTTAATAACTAGGATCTCCTTGCTGCCTTCTATTCCTGTTCATCATATACTATTA CCAAAAATTAAATAAATAAACATTTTCAGGCTAGATTGCATGAGATCATCATTACAAATGCTAA AGCAAAGAATACCAATGAACCAGTGGAGTTTCCATGGATGGTTGATGGTGCAGGATTGCCTGCA AATGCTTCGCAGCTTCTCCCTAAGATG

			
						 Conservation Information
					
						Conserved circRNAs
						
							NA						
					
						PMCS
						0.318410387

Conservation Information
Conserved circRNAs	NA
PMCS	0.318410387

			
						 Functional Information
					
						Coding potential
						Y
					
						Potential coding position
						
							27498607-27499779(+)
27498792-27497714(+)
27497712-27498789(-)
						
						Potential amino acid sequence
						
							MSAAAFAKGLLDLEGQLTPILVSLVSKDSSMLDGLEDASIEMDEAKARLHEIIITNAKAKNTNE
PVEFPWMVDGAGLPANASQLLPKMAEELGRFFRNNIYPGEGTGLLRLHSTYRHDLKIYSSDEGR
VQMSAAAFAKGLLDLEGQLTPILVSLVSKDSSMLDGLEDASIEMDEAKARLHEIIITNAKAKNT
NEPVEFPWMVDGAGLPANASQLLPKMAEELGRFFRNNIYPGEGTGLLRLHSTYRHDLKIYSSDE
GRVQMSAAAFAKGLLDLEGQLTPILVSLVSKDSSMLDGLEDASIEMDEAKARLHEIIITNAKAK
NTNEPVEFPWMVDGAGLPANASQLLPKMAEELGRFFRNNIYPGEGTGLLRLHSTYRHDLKIYSS
DEGRVQMSAAAFAKGLLDLEGQLTPILVSLVSKDSSMLDGLEDASIEMDEAKARLHEIIITNAK
AKNTNEPVEFPWMVDGAGLPANASQLLPKM(+)
MDWKMLASRWMKQRLDCMRSSLQMLKQRIPMNQWSFHGWLMVQDCLQMLRSFSLRWLKSWVGFS
ETIYIQVKELVCFAFIARTDMI*(+)
MSVRAMKAKQTSSFTWIYIVSEKPTQLFSHLREKLRSICRQSCTINHPWKLHWFIGILCFSICN
DDLMQSSLCFIHLDASIFQSI*(-)
						
						Sponge-miRNAs
						
							NA						
					
						circRNA-miRNA-mRNA network
						 VISUALIZATION
					
						Potential function description
						NA

Functional Information
Coding potential	Y
Potential coding position	27498607-27499779(+) 27498792-27497714(+) 27497712-27498789(-)
Potential amino acid sequence	MSAAAFAKGLLDLEGQLTPILVSLVSKDSSMLDGLEDASIEMDEAKARLHEIIITNAKAKNTNE PVEFPWMVDGAGLPANASQLLPKMAEELGRFFRNNIYPGEGTGLLRLHSTYRHDLKIYSSDEGR VQMSAAAFAKGLLDLEGQLTPILVSLVSKDSSMLDGLEDASIEMDEAKARLHEIIITNAKAKNT NEPVEFPWMVDGAGLPANASQLLPKMAEELGRFFRNNIYPGEGTGLLRLHSTYRHDLKIYSSDE GRVQMSAAAFAKGLLDLEGQLTPILVSLVSKDSSMLDGLEDASIEMDEAKARLHEIIITNAKAK NTNEPVEFPWMVDGAGLPANASQLLPKMAEELGRFFRNNIYPGEGTGLLRLHSTYRHDLKIYSS DEGRVQMSAAAFAKGLLDLEGQLTPILVSLVSKDSSMLDGLEDASIEMDEAKARLHEIIITNAK AKNTNEPVEFPWMVDGAGLPANASQLLPKM(+) MDWKMLASRWMKQRLDCMRSSLQMLKQRIPMNQWSFHGWLMVQDCLQMLRSFSLRWLKSWVGFS ETIYIQVKELVCFAFIARTDMI(+) MSVRAMKAKQTSSFTWIYIVSEKPTQLFSHLREKLRSICRQSCTINHPWKLHWFIGILCFSICN DDLMQSSLCFIHLDASIFQSI(-)
Sponge-miRNAs	NA
circRNA-miRNA-mRNA network	VISUALIZATION
Potential function description	NA

			
						 Other Information
					
						References
						Chu et al., 2017

circRNA

Detail information of Os03g0689100_circ_g.9

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